View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_high_32 (Length: 207)
Name: NF2473_high_32
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_high_32 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 26991671 - 26991465
Alignment:
| Q |
1 |
ccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcagatgag |
100 |
Q |
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| T |
26991671 |
ccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcagatgag |
26991572 |
T |
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| Q |
101 |
tctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaactggttgagcagagtatatggattcagatga |
200 |
Q |
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| T |
26991571 |
tctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaactggttgagcagagtatatggattcagatga |
26991472 |
T |
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| Q |
201 |
aggaaat |
207 |
Q |
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||||||| |
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| T |
26991471 |
aggaaat |
26991465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 27006096 - 27005911
Alignment:
| Q |
7 |
aacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcagatgagtctgaa |
106 |
Q |
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| T |
27006096 |
aacaaaccaatgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattacgatgctatagatgaatctgaa |
27005997 |
T |
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| Q |
107 |
gaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaactggttgagcagagtatatggattcagatgaaggaaa |
206 |
Q |
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| T |
27005996 |
gaaaaagttcaaatcagcgaggtttcttcta---------------aagaagaagtgaaggaactggttgagcagagtatatggattcagatgaaggaaa |
27005912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 26975812 - 26975995
Alignment:
| Q |
18 |
gcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtcgcagatgagtctgaagaaaaagatca |
117 |
Q |
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| T |
26975812 |
gcattatttcatcctcgagccggaaccgtcgcttcgggttcctaacacctcgcgtacttcaaaatcaagaagtcgcaaacgaatccgaacaccaagaaca |
26975911 |
T |
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| Q |
118 |
aatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaact---ggttgagcagagtatatggattcagatgaaggaaat |
207 |
Q |
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| T |
26975912 |
aatcagccaggtttcttctaaagaa---------gaagaagaagtgaaggaactactggttgagcaaagtatatggattcagatgaaggaaat |
26975995 |
T |
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