View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_high_8 (Length: 452)
Name: NF2473_high_8
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 3125256 - 3125038
Alignment:
| Q |
15 |
aacctgtgaacaaataaaacgattaaccaaaaatagattcaagagcatttaaatgagatgataaaagtcttttttagcttaaccaaaagtcaaa-gtttc |
113 |
Q |
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| T |
3125256 |
aacctgtgaacaaataaaacgattaaccaaaaatagattcaagagcaattaaatgagatgataaaagtcttttttagcttaaccaaaagtcaaaagtttc |
3125157 |
T |
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| Q |
114 |
aaacacttacctaagaatgagcaacattaacactcttgagatatagttttgttgcttaatgtgttactacccaactctagggattagtttcacttgttgt |
213 |
Q |
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| T |
3125156 |
aaacacttacctaagaatgaacaacattaacactcttgagatatagttttgttgcctaatgtgttactacccaactctagggattagtttcacttgttgt |
3125057 |
T |
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| Q |
214 |
gagcaaagaatatccgatt |
232 |
Q |
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| T |
3125056 |
gagcaaagaatatccgatt |
3125038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 288 - 433
Target Start/End: Complemental strand, 3124994 - 3124848
Alignment:
| Q |
288 |
gctattgtttaattcaatgaccgaaaccaactgaactatattttatccgaatatgttt-aagtttatgtccaatccggtcaaacttgaaatgacttgatt |
386 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3124994 |
gctattgtttaattcaatgaccgaaaccaactaacctatattttatccgaatatgttttaagtttatgtccaatccggtcaaacttgaaatgacttgatt |
3124895 |
T |
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| Q |
387 |
tgggtaaaagaattatgattataaacccgcaaactcaactcttcaaa |
433 |
Q |
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| T |
3124894 |
tgggtaaaagaattatgattctaaacccgcaaactcaactcttcaaa |
3124848 |
T |
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