View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2473_high_9 (Length: 450)

Name: NF2473_high_9
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2473_high_9
NF2473_high_9
[»] chr4 (32 HSPs)
chr4 (17-444)||(1548261-1548689)
chr4 (17-378)||(1552668-1553035)
chr4 (167-444)||(546897-547177)
chr4 (176-283)||(1524485-1524592)
chr4 (167-278)||(8187095-8187206)
chr4 (167-356)||(570335-570524)
chr4 (131-423)||(3438422-3438716)
chr4 (179-440)||(55908567-55908831)
chr4 (176-337)||(553472-553633)
chr4 (176-278)||(1513411-1513513)
chr4 (211-408)||(1600447-1600647)
chr4 (176-278)||(12121461-12121563)
chr4 (178-278)||(8184034-8184134)
chr4 (180-295)||(532186-532301)
chr4 (178-277)||(558493-558592)
chr4 (114-359)||(53761692-53761937)
chr4 (197-278)||(1519146-1519227)
chr4 (19-292)||(1537757-1538030)
chr4 (176-264)||(1508021-1508109)
chr4 (167-288)||(640899-641020)
chr4 (198-273)||(659726-659799)
chr4 (19-278)||(1489365-1489624)
chr4 (167-278)||(7307844-7307955)
chr4 (169-295)||(55505095-55505221)
chr4 (238-337)||(644885-644984)
chr4 (209-255)||(12116602-12116648)
chr4 (78-227)||(566084-566233)
chr4 (238-360)||(21834297-21834422)
chr4 (176-278)||(7225887-7225989)
chr4 (308-411)||(8186959-8187065)
chr4 (212-278)||(1545802-1545868)
chr4 (19-149)||(12121590-12121720)
[»] chr8 (10 HSPs)
chr8 (176-444)||(18315108-18315379)
chr8 (176-433)||(32151294-32151551)
chr8 (79-278)||(27922404-27922603)
chr8 (176-408)||(34936034-34936269)
chr8 (171-414)||(17636262-17636512)
chr8 (176-337)||(28246240-28246399)
chr8 (167-283)||(21235542-21235658)
chr8 (386-441)||(17627897-17627952)
chr8 (131-278)||(17628018-17628165)
chr8 (178-218)||(44736530-44736570)
[»] chr3 (8 HSPs)
chr3 (22-444)||(51113619-51114041)
chr3 (131-433)||(13470581-13470883)
chr3 (171-339)||(51120836-51121004)
chr3 (131-441)||(51764281-51764591)
chr3 (195-263)||(27005791-27005859)
chr3 (176-278)||(1657244-1657346)
chr3 (219-276)||(33714861-33714918)
chr3 (223-263)||(36811046-36811086)
[»] chr6 (27 HSPs)
chr6 (176-360)||(6432154-6432341)
chr6 (178-360)||(6402855-6403040)
chr6 (87-360)||(6394768-6395044)
chr6 (178-413)||(7119152-7119387)
chr6 (178-413)||(7131630-7131865)
chr6 (176-298)||(6409999-6410121)
chr6 (176-360)||(6415959-6416146)
chr6 (167-360)||(6426495-6426691)
chr6 (131-360)||(6585156-6585388)
chr6 (176-337)||(11936220-11936381)
chr6 (176-337)||(11948200-11948361)
chr6 (131-355)||(19632387-19632611)
chr6 (176-296)||(6423210-6423330)
chr6 (197-340)||(6589265-6589408)
chr6 (179-360)||(6594525-6594709)
chr6 (89-360)||(7994101-7994375)
chr6 (167-444)||(9411339-9411616)
chr6 (191-298)||(12102274-12102381)
chr6 (189-266)||(28935055-28935132)
chr6 (190-294)||(6596916-6597020)
chr6 (178-278)||(6603206-6603306)
chr6 (178-276)||(14802331-14802429)
chr6 (87-255)||(14818287-14818454)
chr6 (178-268)||(10579750-10579840)
chr6 (87-360)||(14820597-14820873)
chr6 (232-295)||(9410751-9410814)
chr6 (178-278)||(6586114-6586214)
[»] chr5 (7 HSPs)
chr5 (89-407)||(32267381-32267699)
chr5 (131-442)||(41889391-41889705)
chr5 (22-275)||(41901542-41901795)
chr5 (176-275)||(37937880-37937979)
chr5 (176-339)||(20478025-20478188)
chr5 (178-276)||(38267562-38267660)
chr5 (310-419)||(41901398-41901510)
[»] chr7 (2 HSPs)
chr7 (176-412)||(10614586-10614822)
chr7 (176-359)||(15092071-15092257)
[»] chr2 (3 HSPs)
chr2 (179-440)||(1037503-1037767)
chr2 (178-444)||(32785610-32785876)
chr2 (176-276)||(45245091-45245191)
[»] chr1 (10 HSPs)
chr1 (97-295)||(19468486-19468684)
chr1 (88-249)||(7554393-7554554)
chr1 (184-278)||(52082582-52082676)
chr1 (182-361)||(52092776-52092955)
chr1 (176-273)||(9586632-9586729)
chr1 (167-255)||(43634891-43634979)
chr1 (131-249)||(29718956-29719074)
chr1 (384-441)||(19468340-19468397)
chr1 (388-444)||(9581276-9581332)
chr1 (313-444)||(9586766-9586900)
[»] scaffold0295 (1 HSPs)
scaffold0295 (182-370)||(533-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (175-291)||(39176-39285)
[»] scaffold0014 (1 HSPs)
scaffold0014 (166-268)||(88822-88924)
[»] scaffold0807 (1 HSPs)
scaffold0807 (190-355)||(1388-1559)


Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 1548689 - 1548261
Alignment:
Q  17 atctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1548689 atctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgagcagt 1548590  T
Q  117 tttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgt 216  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1548589 tttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgt 1548490  T
Q  217 ttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcc-aagtagcttcacttttaaactacgagctaagtt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1548489 ttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagctaagtt 1548390  T
Q  316 caactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548389 caactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatc 1548290  T
Q  416 gaagaaaatattttgatggtttcatctct 444  Q
    |||||||||||||||||||||||||||||    
T  1548289 gaagaaaatattttgatggtttcatctct 1548261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 1553035 - 1552668
Alignment:
Q  17 atctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagt 116  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| || || || || |||||||| |||||| || ||||| |||||| || | |    
T  1553035 atctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaagcaat 1552936  T
Q  117 tttcttctatatggttcactcccttctctgtgatatttt---tacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgag 213  Q
    ||||| | | ||| |||||||||||||| |||| ||  |   ||||  ||| ||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  1552935 tttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagctgcaaaagcccacgacaattctttgatatcacattgag 1552836  T
Q  214 tgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt---ttaaactacgagct 310  Q
    ||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||   | |||||| | |||    
T  1552835 tgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttcagtccaagtagcttcccttctataaaactatgggct 1552736  T
Q  311 aagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgca 378  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1552735 aagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccagtgca 1552668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 167 - 444
Target Start/End: Original strand, 546897 - 547177
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    |||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||  | | ||||| |||||||||||| |||||||| ||| ||||    
T  546897 agtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaa 546996  T
Q  267 tttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtc 363  Q
     ||||||||||| ||||| ||| ||||||  ||||| |   | ||||||||| || || ||||||||||||   |||||||| ||||||||||  || ||    
T  546997 cttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttc 547096  T
Q  364 tgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 444  Q
     ||||||  ||  |||| | | |||||||||||||||||||||||||| || |||| ||| ||||||||| ||||||||||    
T  547097 agatatgttacgacaataacttaaatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatctct 547177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 1524592 - 1524485
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| ||||||||    
T  1524592 tgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagt 1524493  T
Q  276 tcagtcca 283  Q
    ||| ||||    
T  1524492 tcattcca 1524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 8187206 - 8187095
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    |||||||| ||||||||||||| |||||||||||| ||  |||  ||||||| ||||||||  |||||||||||||||||||||||||||||||||| ||    
T  8187206 agtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaa 8187107  T
Q  267 tttcaaagttca 278  Q
    ||||||||||||    
T  8187106 tttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 167 - 356
Target Start/End: Original strand, 570335 - 570524
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    |||||||  ||||||||||| |||||||||||||| |||| || ||||  ||| | |||||  | ||||| |||||||||||||||||| |||||| |||    
T  570335 agtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaa 570434  T
Q  267 tttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaatac 356  Q
     ||||||||||| |||| | || ||||||||| | |   ||||||||||||| || ||||  ||||||||||||||||||| ||||||||    
T  570435 cttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagtttacaacatcttaaaacttgacaaatac 570524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 131 - 423
Target Start/End: Complemental strand, 3438716 - 3438422
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    |||||||||||| |||||| |  |||||||  ||  |||||||  ||||||||||||| ||||||||||||||| |||| |||| ||| ||||||||  |    
T  3438716 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtattt-atcatcaactc 3438618  T
Q  231 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 330  Q
    |||||||||||||| |||| ||||||| ||| | ||  |||||||||| | ||   |  ||||||  ||||| || |||||||||||| |||||||||||    
T  3438617 ttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatctt 3438518  T
Q  331 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaa 423  Q
    |||||||   |||||||||| |  || ||||||||| ||||||     ||| |   ||| ||||||||| ||||||||||||||||| ||||||||    
T  3438517 acaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaattggggaaaatagaagaaaa 3438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 440
Target Start/End: Complemental strand, 55908831 - 55908567
Alignment:
Q  179 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    |||||||||| |||| |||||||||||| || ||||||||||||||||| || ||||||||||||||| |||||||| | ||  |||| || |||||| |    
T  55908831 aaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagttta 55908732  T
Q  279 gtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccact 375  Q
     || |||||| |||||| || |||     ||||| ||||| ||||||| ||||||||||   |||| |||||||||||||||||| || ||||||  |      
T  55908731 ttctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatg 55908632  T
Q  376 gcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcat 440  Q
    |||     |||||||||| | |||||||||||||||||| |||| ||| | | ||||| ||||||    
T  55908631 gcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat 55908567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 337
Target Start/End: Original strand, 553472 - 553633
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||  |||||||||||| |||||||| |||| |||||||||||  ||||||  ||||||||||||||||||||||||| ||| || |||||    
T  553472 tgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagt 553571  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 337  Q
    ||| |  | ||| ||||||| || |||  || | ||||||||| |||||||| |||||||||    
T  553572 tcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacat 553633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 1513513 - 1513411
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||||||||| ||||||||| || | ||||||||||||||||| | |||||  ||||||||||||||| || |||||||||| ||||||||    
T  1513513 tgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagt 1513414  T
Q  276 tca 278  Q
    |||    
T  1513413 tca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 211 - 408
Target Start/End: Original strand, 1600447 - 1600647
Alignment:
Q  211 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 310  Q
    ||||| |||||| ||||  ||||||| ||||||||||||||||||||||||  ||| ||||||||||| |||  | ||||||| | || |||   | |||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggct 1600546  T
Q  311 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 407  Q
    |||||||| |||||||| ||| || ||   |||||||||| |||||||||||| || ||||||  | ||||| |  ||||||||||||||||||||||||    
T  1600547 aagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgg 1600646  T
Q  408 g 408  Q
    |    
T  1600647 g 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 12121563 - 12121461
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||||||||||||| |||| ||||||||| ||   ||||||||||||||||| | |||||| ||||||||||||||| || |||||||||| ||||||||    
T  12121563 tgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagt 12121464  T
Q  276 tca 278  Q
    |||    
T  12121463 tca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 8184134 - 8184034
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    ||||||||||| |||||||||||||||  ||| ||||| |  ||||||||  |||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  8184134 caaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttc 8184035  T
Q  278 a 278  Q
    |    
T  8184034 a 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 532186 - 532301
Alignment:
Q  180 aaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcag 279  Q
    ||||| |||||||| |||||||| ||||||  ||  |||||||||||||  |||||| |||||||||||||||||| || ||||| | |||||||||||     
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcat 532285  T
Q  280 tccaagtagcttcact 295  Q
    ||||||||| ||||||    
T  532286 tccaagtagattcact 532301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 558493 - 558592
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||   |||||||||||||||| | || |||| || ||||||||||    
T  558493 caaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacccctaggttggcaacttcaaagttc 558592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 359
Target Start/End: Complemental strand, 53761937 - 53761692
Alignment:
Q  114 agttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgag 213  Q
    |||||||||| | ||| ||||||||||| || |||| ||| | |||| |||| ||||| |  |||||||||||||||||| |||| |||||||||  |||    
T  53761937 agttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaatat-tgcaaaagcccacgacaattcttcgagatcaca--gag 53761841  T
Q  214 tgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaag 313  Q
    ||||| ||| | ||   | |||  ||||||||||||| |||| || ||||||| | ||||||||| ||||| |||||||||| || |||     ||||||    
T  53761840 tgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaag 53761741  T
Q  314 ttcaactgtctaatcttacaacat---cttaaaacttcacaaatacctt 359  Q
    ||||| || ||||| |||||||||   |||||||||| |||||||||||    
T  53761740 ttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 1519227 - 1519146
Alignment:
Q  197 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    ||||||||||||| ||||| ||  |||||||  |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 1538030 - 1537757
Alignment:
Q  19 ctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttt 118  Q
    |||||| || ||||| |||||||||| |||||| |  | ||||||||||| || ||||| ||| | || |||||| || ||||| ||||| | | | |||    
T  1538030 ctttcttaacgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtgcatttt 1537931  T
Q  119 tcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgttt 218  Q
    |||   | ||  ||||||||||||| ||||| |   | |||| |||  ||||| |  ||||||||||||||||||| ||||||||| |||   |||||||    
T  1537930 tctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcccacgacaacactttgagattacacacagtgttt 1537831  T
Q  219 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttc 292  Q
      |||| || | |||||| ||||||||||||||| || |||||||||| ||||||||||| |||| | ||||||    
T  1537830 tgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 1508109 - 1508021
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttggg 264  Q
    ||||||||||||||||||| ||||||||| |||   |||||||||||||||| | | |||||||||||||||||||| || ||||||||    
T  1508109 tgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacacttctagtttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 640899 - 641020
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    |||||||  |||||||| ||||| ||| |||||||| |||| | |||||||||||||||||   |||||| |||||||||||||||||||| | | || |    
T  640899 agtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggta 640998  T
Q  267 tttcaaagttcagtccaagtag 288  Q
     |||||| |||| |||||||||    
T  640999 gttcaaatttcattccaagtag 641020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 659726 - 659799
Alignment:
Q  198 ttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaa 273  Q
    ||||||||||||  |||||||||| || || ||||||||||||||||||||||||||| |||||||||| ||||||    
T  659726 ttgagatcacat--agtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 1489624 - 1489365
Alignment:
Q  19 ctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttt 118  Q
    |||||| || ||||| |||||||||| |||||| || | |||||||||||||| ||||  |||   || |||||| || ||||| ||||| | | | |||    
T  1489624 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttt 1489525  T
Q  119 tcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgttt 218  Q
    |||   | ||| ||||||||||||||||||| |||   ||| | ||  ||||| |  |||||||||||||| |||| | ||||||| |||   |||||||    
T  1489524 tctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagattacacacagtgttt 1489425  T
Q  219 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    | |  | || | |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  1489424 cgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 7307844 - 7307955
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    ||||||| ||||||||||| || ||||||||||||||||| |   |||| |||||||||||    ||||| |||||||||||| ||||||| ||||||||    
T  7307844 agtaacaggtgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaa 7307943  T
Q  267 tttcaaagttca 278  Q
     || ||||||||    
T  7307944 ctttaaagttca 7307955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 55505221 - 55505095
Alignment:
Q  169 taacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatt 268  Q
    |||||| |||||||| ||||||||| |||||||| ||||||  |||||| |||| ||||   |||||| |||||||||||||||||| |||| ||| | |    
T  55505221 taacaaatgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggact 55505122  T
Q  269 tcaaagttcagtccaagtagcttcact 295  Q
      |||||||| ||||| ||| ||||||    
T  55505121 ctaaagttcattccaattaggttcact 55505095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 644885 - 644984
Alignment:
Q  238 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 337  Q
    ||||||||  ||||||||||||||||||| ||||||||||| |  ||||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  644885 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 644984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 12116648 - 12116602
Alignment:
Q  209 ttgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctc 255  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  12116648 ttgagtgattcatcatcaacacttgtatgtgacaagttcaacacctc 12116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 566084 - 566233
Alignment:
Q  78 aacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtg 177  Q
    ||||||| ||||| || |||||||||||||| | | |||||||  | |  || ||||||||||||||||| | ||||| |  |  ||  ||| |||  ||    
T  566084 aacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatattgcagtgacagctg 566183  T
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaa 227  Q
    |||||||||||||||   |||||||||||||| |||||||||||||||||    
T  566184 caaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaa 566233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 360
Target Start/End: Complemental strand, 21834422 - 21834297
Alignment:
Q  238 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 337  Q
    |||||||| |||||||||||| ||||||| | ||||||| |  | | |||||||||||||  ||| ||  | ||||||||| ||  ||||||||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 21834323  T
Q  338 ---cttaaaacttcacaaataccttc 360  Q
       ||||||||||| |||||||||||    
T  21834322 ttccttaaaacttcgcaaataccttc 21834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 7225989 - 7225887
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||||||| |||| |||||||||||| ||||||   |||  ||  |||||||  |||||||||||||||||||| ||||||| || | ||| ||||||||    
T  7225989 tgcaaaagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagt 7225890  T
Q  276 tca 278  Q
    |||    
T  7225889 tca 7225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 411
Target Start/End: Complemental strand, 8187065 - 8186959
Alignment:
Q  308 gctaagttcaactgtctaatcttacaacatctt---aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 404  Q
    ||||||||||| |  ||||||| |||||||||    ||||||| |||||||||||| || |||||| ||  ||||| | ||||||||||||  |||||||    
T  8187065 gctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaat 8186966  T
Q  405 tggggaa 411  Q
    |||||||    
T  8186965 tggggaa 8186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 1545802 - 1545868
Alignment:
Q  212 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    ||||||||||||||||  ||||||    |||||||||||||||||||||| |||| || ||||||||    
T  1545802 agtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttca 1545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 12121720 - 12121590
Alignment:
Q  19 ctttctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttt 118  Q
    ||||||||||||||| |||||||||| |||||| || | |||||||  ||||| ||||| ||||  || |||||  || ||||| ||||| | | | |||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttt 12121621  T
Q  119 tcttctatatggttcactcccttctctgtga 149  Q
    ||| | | ||| ||||||||| |||||||||    
T  12121620 tctaccacatgcttcactcccatctctgtga 12121590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 176 - 444
Target Start/End: Complemental strand, 18315379 - 18315108
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||||||||||||||||||||||||| || |||||    
T  18315379 tgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagt 18315280  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatct---tacaacatcttaaaacttcacaaataccttcgtctgatatgcc 372  Q
    ||| |||| ||||||||| | || ||  ||||||||||||||||||||||||||    ||||| || |||||||| |||||||||||| || | ||||      
T  18315279 tcattccacgtagcttcattcttgaatcacgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgtt 18315180  T
Q  373 actgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 444  Q
    |  ||| |   ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||| |||||    
T  18315179 atcgcagtagctcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctct 18315108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 176 - 433
Target Start/End: Original strand, 32151294 - 32151551
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||  ||||||||| ||||||||||| |||| || ||| ||||    
T  32151294 tgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagt 32151393  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccact 375  Q
    ||| |||| | |||||||| | |||||  |  |  || ||||| || ||||||| | | ||||||||||||| |||||| ||||| || ||||||  |      
T  32151394 tcattccacgcagcttcacatgtaaacagccggtgaaattcaaatgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatg 32151493  T
Q  376 gcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatg 433  Q
    ||||    |||||||||||||||||||||| |||||||| |||| ||| |||||||||    
T  32151494 gcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 79 - 278
Target Start/End: Original strand, 27922404 - 27922603
Alignment:
Q  79 acaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgc 178  Q
    |||||| |||||| |||| | ||||||||| | | |||||||| | | ||||||||||||||||| ||||| ||  ||||||  ||  ||| |||| | |    
T  27922404 acaaccatccaaactaatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttc 27922503  T
Q  179 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    |||||||||| ||||||||||||||||| ||  |||| ||||||||||| | |||||| |||||||||||||||||||| |||||||| |||||||||||    
T  27922504 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 408
Target Start/End: Complemental strand, 34936269 - 34936034
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||||||||||||||| |||  ||| |||||||| ||||||||  ||||||| |||||||| ||||||||| ||||| ||||  ||||||     
T  34936269 tgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaaga 34936170  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgcc 372  Q
    ||| ||   | || ||||||||| ||| |   || |||| ||| |||||||| | |||||||   |||||||| | | |||||||||  |  ||||||||    
T  34936169 tcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaacatgataaataccttgattagatatgcc 34936070  T
Q  373 actgcaattaatcaaatcaagcagttgcaaattggg 408  Q
    ||||||||   ||||||||||||| |||||||||||    
T  34936069 actgcaatcgctcaaatcaagcagatgcaaattggg 34936034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 414
Target Start/End: Complemental strand, 17636512 - 17636262
Alignment:
Q  171 acaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttc 270  Q
    |||| |||||||| | | |||||||||||||||||||||  | || |||||| ||||  | ||| |||||||||||||||||||||| |||||||| |||    
T  17636512 acaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttc 17636413  T
Q  271 aaagttca----gtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtc 363  Q
    ||||||||     || | |||| |||||| || |||  ||  |||||||||| || ||||| ||| |||||   |||||||||| |||||||||||  ||    
T  17636412 aaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaatacctttctc 17636313  T
Q  364 tgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaat 414  Q
    ||||||   | ||||||     ||||||||||| |||||||||||||||||    
T  17636312 tgatattttattgcaatctcgtaaatcaagcagctgcaaattggggaaaat 17636262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 337
Target Start/End: Complemental strand, 28246399 - 28246240
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||| | ||||||||||||||||  || ||||| || ||  ||||  ||||||  |||||||| |||||||||||||||||||| ||||||||    
T  28246399 tgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 28246302  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 337  Q
    ||| |  | ||||||||| | || ||| ||||| ||| ||||| |||||||| |||||||||    
T  28246301 tcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacat 28246240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 21235542 - 21235658
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    |||||||  ||||||||||  ||||| |||||||| |||| || ||||  ||| | |||||  | ||||| |||||||||||||||||||||||||||||    
T  21235542 agtaacagttgcaaaagcctgcgacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaa 21235641  T
Q  267 tttcaaagttcagtcca 283  Q
     ||||||||||| ||||    
T  21235642 cttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 17627952 - 17627897
Alignment:
Q  386 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatc 441  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatc 17627897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 17628165 - 17628018
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    ||||||||||| ||||||| |  |||||||  || |||||| |  | ||| ||||||  |||| ||||||||||||||  ||||| || ||||||||  |    
T  17628165 ttcactcccttgtctgtgacacctttacaaaattctagtaatagtttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactc 17628066  T
Q  231 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    | ||||||||||||||||||||||||| ||| | || || ||||||||    
T  17628065 tagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 44736530 - 44736570
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgttt 218  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  44736530 caaaagcccacaacaactctttgagatcacaatgagtgttt 44736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 22 - 444
Target Start/End: Complemental strand, 51114041 - 51113619
Alignment:
Q  22 tctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttttct 121  Q
    |||||||||||| |||||||||| || ||| || |||| || | |||||| || ||||||||| |  |||||||| ||||| ||||  | | | ||||||    
T  51114041 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttct 51113942  T
Q  122 tctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcat 221  Q
     | | ||| ||||||||||||||||||| ||  | ||||  ||| |||||||  ||||||||||||| ||||||||| |||||||||| |||||||||||    
T  51113941 accacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcat 51113842  T
Q  222 catcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactg 321  Q
    ||||||   |||||| ||||||||  ||||||||||||||||||  ||||||||||| |||||||||||||| |||| |||    |||||| ||||| ||    
T  51113841 catcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatg 51113742  T
Q  322 tctaatcttacaacatc---ttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaa 418  Q
     ||||| ||||||||||   ||||||||| |||||||||||||   |||||  ||  ||||| | | |||||||| || |||| |||||||||||| |||    
T  51113741 cctaattttacaacatctctttaaaacttgacaaataccttcg---gatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaatggaa 51113645  T
Q  419 gaaaatattttgatggtttcatctct 444  Q
    | ||  ||| ||||| | ||||||||    
T  51113644 gcaatcattatgatgctctcatctct 51113619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 433
Target Start/End: Complemental strand, 13470883 - 13470581
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    ||||||||||  ||||||| ||| | |||| |||  ||||| |  ||||||||||||| |||| |||||||||||| || |||||||| ||||| ||       
T  13470883 ttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacct 13470784  T
Q  231 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 330  Q
    |||||| ||||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||    
T  13470783 ttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatctt 13470684  T
Q  331 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 427  Q
    |||||||   |||||||||| ||||||||||   | ||||| |  | |||||  | ||||||||||||| ||||||||||||||| | |||| ||| |||    
T  13470683 acaacatatccttaaaacttgacaaatacct---tttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacatt 13470587  T
Q  428 ttgatg 433  Q
     |||||    
T  13470586 atgatg 13470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 339
Target Start/End: Complemental strand, 51121004 - 51120836
Alignment:
Q  171 acaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttc 270  Q
    |||| ||||||||||||||||||||||||||||| ||||  ||| ||||||||||||  |||||||| ||||||||||||||||||| |||| ||| |||    
T  51121004 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 51120905  T
Q  271 aaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct 339  Q
    |||||||| |||| | || |||||| || ||| ||  |  |||||||| |||||||| |||||||||||    
T  51120904 aaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatct 51120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 131 - 441
Target Start/End: Complemental strand, 51764591 - 51764281
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    ||||||||||||||  ||| ||| | |||| |||  ||||| |  ||||||||||| | |||| ||||||||||| ||| |||||||| ||||||||       
T  51764591 ttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaactt 51764492  T
Q  231 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaac-tacgagctaagttcaactgtctaatct 329  Q
    |||||  ||||||||  ||||||||||| || |||| | ||||||||| |||||||||||||||| || ||| | || | || |||||| || |||||||    
T  51764491 ttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcg-gataggttcaaatgcctaatct 51764393  T
Q  330 tacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatat 426  Q
    || |||||   |||||||||||||| | ||||   |  ||||||| | |||||  | | ||||||||||| ||||||||||||||||| |||| ||| ||    
T  51764392 tagaacatctccttaaaacttcacagacacct---ttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacat 51764296  T
Q  427 tttgatggtttcatc 441  Q
    | ||||| |||||||    
T  51764295 tatgatgctttcatc 51764281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 27005859 - 27005791
Alignment:
Q  195 tctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgg 263  Q
    |||||||||| ||||  ||||||  || |||||| |||||||||||||||||||| |||||||||||||    
T  27005859 tctttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctccagtttgg 27005791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 1657244 - 1657346
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||| |  |||||||||||||||  || ||||| |  ||  ||||  ||||||  |||||||| |||||||||||||||||||| ||||||||    
T  1657244 tgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 1657343  T
Q  276 tca 278  Q
    |||    
T  1657344 tca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 33714918 - 33714861
Alignment:
Q  219 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 276  Q
    |||||||||| ||||  | ||||||||||| |||||||||||||| || |||||||||    
T  33714918 catcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 36811086 - 36811046
Alignment:
Q  223 atcaatacttgtatgtgacaagttcaacacctccagtttgg 263  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  36811086 atcaattcttgaatgggacaagttcaacacctccagtttgg 36811046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 360
Target Start/End: Original strand, 6432154 - 6432341
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||| |||||||| |||| ||||| |||||||||  ||||||||||||||||  ||||||| ||||||||||||||||| ||| ||||||| ||||||||    
T  6432154 tgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagt 6432253  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
    ||| |||| ||||||||||||||| || |   ||||||||||| ||| |||  |||||||||   |||||||||| ||||||||||||    
T  6432254 tcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 360
Target Start/End: Original strand, 6402855 - 6403040
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||||||   | |||| ||||||||||||||| || |||| ||||| | |||||||     
T  6402855 caaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagttt 6402954  T
Q  278 agtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
    | |||||||||||||||| || |||  | || ||||||||| || ||||| |||||||||   |||||||||| ||||||||||||    
T  6402955 attccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 87 - 360
Target Start/End: Original strand, 6394768 - 6395044
Alignment:
Q  87 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 186  Q
    |||||||||| ||||||| ||| | | |||||||| | | ||| | ||| ||||| ||||||| ||||||||||   |  |||   || |||||||||||    
T  6394768 ccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagccc 6394867  T
Q  187 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagt 286  Q
    || |||| ||||||||||||||   || |||||||||||||  ||||||| ||||||||||||||||||||| | ||||| | ||||||||| |||| ||    
T  6394868 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgt 6394967  T
Q  287 agcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
    || ||||||||| |||    |||||||||||| ||| ||| ||||||||||    ||||||||| ||||||||||||    
T  6394968 agtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 178 - 413
Target Start/End: Original strand, 7119152 - 7119387
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    ||||||||| | |||| |||| |||||||||| |||||||||||||||||   | |||| ||||||||||||||||||||| | | |||   ||||||||    
T  7119152 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttc 7119251  T
Q  278 agtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccac 374  Q
    | |||||||||||||||| || |||   | ||||||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  |     
T  7119252 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttat 7119348  T
Q  375 tgcaattaatcaaatcaagcagttgcaaattggggaaaa 413  Q
    ||||| || |||||||||| ||||| |||||||||||||    
T  7119349 tgcaagtattcaaatcaagaagttgtaaattggggaaaa 7119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 178 - 413
Target Start/End: Original strand, 7131630 - 7131865
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    ||||||||| | |||| |||| |||||||||| |||||||||||||||||   | |||| ||||||||||||||||||||| | | |||   ||||||||    
T  7131630 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttc 7131729  T
Q  278 agtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccac 374  Q
    | |||||||||||||||| || |||   | ||||||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  |     
T  7131730 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttat 7131826  T
Q  375 tgcaattaatcaaatcaagcagttgcaaattggggaaaa 413  Q
    ||||| || |||||||||| ||||| |||||||||||||    
T  7131827 tgcaagtattcaaatcaagaagttgtaaattggggaaaa 7131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 6409999 - 6410121
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||||||||| || |||| |||||||||||||||  || |||||||||||||  ||||||| |||| |||||||||||| ||| ||||||| ||||||||    
T  6409999 tgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagt 6410098  T
Q  276 tcagtccaagtagcttcactttt 298  Q
    ||| |||| ||||||||||||||    
T  6410099 tcattccatgtagcttcactttt 6410121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 360
Target Start/End: Original strand, 6415959 - 6416146
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||| | |||| ||||||||||||||| ||| |||| ||||| ||   |||||| ||||||||||||||||||||| ||||||| | ||||||    
T  6415959 tgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt 6416058  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
     || |||| ||||||||||||||  || |   ||||||||||| || | |||||||||||||    ||||||||| ||||||||||||    
T  6416059 ccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 167 - 360
Target Start/End: Original strand, 6426495 - 6426691
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    ||||| || ||||||| || || |||| ||||||||||| |||  |  |||||||||||||| ||||| | |||||| |||||||||||||| | |||||    
T  6426495 agtaataattgcaaaatccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaa 6426594  T
Q  267 tttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
     | ||||||||| |||| |||| ||||| ||| |||    |||||||||||| ||| ||| ||||||||||   |||||||||||||||||||||||    
T  6426595 ctgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttc 6426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 131 - 360
Target Start/End: Complemental strand, 6585388 - 6585156
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    |||| |||||||||||||| ||||| ||||| ||| ||||| |  | ||||||| ||  |||||||||||||||||||| |||||||||||||||||       
T  6585388 ttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacct 6585289  T
Q  231 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 330  Q
    |||||| |||||||||||| |||||||  | || || |  |||||| | |||||||||||||||| || |||  | ||  |||||||| || ||||| ||    
T  6585288 ttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagtaaagttcaaatgcctaatatt 6585189  T
Q  331 acaacat---cttaaaacttcacaaataccttc 360  Q
    | |||||   |||||||| | ||||||||||||    
T  6585188 aaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 337
Target Start/End: Complemental strand, 11936381 - 11936220
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||| ||||||||||||||||  || ||||| || ||| ||||  ||||||  |||||||| |||||||||||||||||||| ||||||||    
T  11936381 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 11936282  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 337  Q
    ||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11936281 tcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 337
Target Start/End: Complemental strand, 11948361 - 11948200
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||| ||||||||||||||||  || ||||| || ||| ||||  ||||||  |||||||| |||||||||||||||||||| ||||||||    
T  11948361 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 11948262  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 337  Q
    ||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11948261 tcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11948200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 355
Target Start/End: Original strand, 19632387 - 19632611
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    |||||||||||||||||||||||   ||||  ||| ||||| |  ||||||||||||| |||| ||||||||||||||   |||   ||||||||||       
T  19632387 ttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaaaagttgctcatcatcaacct 19632486  T
Q  231 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 330  Q
    ||||||  ||||||| ||||||||| || ||||||| |  |||||| | ||||||||| || ||| || |||  |||| ||||||||| ||  | |||||    
T  19632487 ttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaaatgcgttatctt 19632586  T
Q  331 acaacatcttaaaacttcacaaata 355  Q
    ||||||||||||||||| |||||||    
T  19632587 acaacatcttaaaacttgacaaata 19632611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 6423210 - 6423330
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||| ||||| |||||||||||||||| ||| |||||||| |||   ||  ||||||| ||||||||||||||||||||| ||||||| || |||||    
T  6423210 tgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagt 6423309  T
Q  276 tcagtccaagtagcttcactt 296  Q
    ||| | || ||||||||||||    
T  6423310 tcattgcacgtagcttcactt 6423330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 6589408 - 6589265
Alignment:
Q  197 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt 296  Q
    |||||||||| ||  ||||||| ||||| || | |||||| |||||||||||||||||||||  |||||| | ||||||||| |||||||||||||||||    
T  6589408 tttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactt 6589309  T
Q  297 ttaaactacgagctaagttcaactgtctaatcttacaacatctt 340  Q
    |   ||     ||||||||||| || ||||||||||||||||||    
T  6589308 tcttacagaaggctaagttcaaatgcctaatcttacaacatctt 6589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 360
Target Start/End: Complemental strand, 6594709 - 6594525
Alignment:
Q  179 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    |||||||||| |||| ||||||||||||||   ||||| ||||||||||    ||||| |||||||| |||||||||||||||||||| |  |||||| |    
T  6594709 aaaagcccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagttta 6594610  T
Q  279 gtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
     |||| ||||||||||| || |||  |  | ||||| ||| ||| |||||||| |||||   |||||||||| ||||||||||||    
T  6594609 ttccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 89 - 360
Target Start/End: Complemental strand, 7994375 - 7994101
Alignment:
Q  89 aaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccac 188  Q
    |||| ||| ||| ||||||||| | |||||||| | | ||| |||||||||| ||| || | ||  |||||| |||  ||||| |  |||||||| |||     
T  7994375 aaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccag 7994276  T
Q  189 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 288  Q
     |||| |||||||||||||||  |||||||| |||| ||  ||||||| ||||| |||||||||||| || || |||| | ||||||||| ||| |||||    
T  7994275 aacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtag 7994176  T
Q  289 cttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
    ||||||| ||  || |   |||| |||||| || || ||||||||||||   |||||||| | ||||||||||||    
T  7994175 cttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 167 - 444
Target Start/End: Original strand, 9411339 - 9411616
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    |||||||  |||||||| ||||||||| ||||||||||| ||| |||| |||||||   || || ||||| ||||||||||||||||||||| |||||||    
T  9411339 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 9411438  T
Q  267 tttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtc 363  Q
      |||||||||| ||||   ||| ||||     || ||| ||||| |||||| |||||||| |||| ||||||   |||||| |   ||||||||||||     
T  9411439 cctcaaagttcaatccatcgagcgtcacac---aagtacaagctaggttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgtt 9411535  T
Q  364 tgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 444  Q
     ||||||  ||  ||     ||||||||||||| ||||||||||||||||| |||| |||  |||||||| ||| ||||||    
T  9411536 agatatgttacaacatccgctcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctct 9411616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 12102274 - 12102381
Alignment:
Q  191 caactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagct 290  Q
    ||||||||||| |||| || ||||  ||| | |||||  | ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || |    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtt 12102373  T
Q  291 tcactttt 298  Q
    ||||||||    
T  12102374 tcactttt 12102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 28935055 - 28935132
Alignment:
Q  189 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 266  Q
    ||||||||||||| |||||| |||||| |||||| ||||  |||||||||||||||||||||||||| |||| |||||    
T  28935055 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaa 28935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 6597020 - 6596916
Alignment:
Q  190 acaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 289  Q
    |||| ||||||||||  | | ||||||||||||||||| | |||||  ||||||||||||||||||||| | ||||||||||||||| | | ||||| ||    
T  6597020 acaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgc 6596921  T
Q  290 ttcac 294  Q
    |||||    
T  6596920 ttcac 6596916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 6603306 - 6603206
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    |||||||||| ||||||||||||||||| ||| || |||||||||||||| || ||||| || ||||| ||||||||  || ||||||| | ||||||||    
T  6603306 caaaagcccaggacaactctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttc 6603207  T
Q  278 a 278  Q
    |    
T  6603206 a 6603206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 276
Target Start/End: Original strand, 14802331 - 14802429
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 276  Q
    |||||| |||| |||| ||||||| ||||||| |||||||||||||||||   |||||| |||||| |||||||| ||||  ||||||| |||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 14818287 - 14818454
Alignment:
Q  87 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 186  Q
    ||||||||||| ||||||| || | | |||||||| ||| ||| ||||| ||||||||||||| ||| ||||||  ||  ||||| ||  ||||||||||    
T  14818287 ccaaattaatt-ctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagccc 14818385  T
Q  187 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctc 255  Q
    |  |||| |||| ||||||| ||  |||||||||| |||||   |||||| ||| ||||||||||||||    
T  14818386 agaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctc 14818454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 10579840 - 10579750
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatt 268  Q
    |||||||| || |||| |||||||||||  || |||||||| ||||||||   |||||| ||||||||||||||||||||| | |||||||    
T  10579840 caaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaatt 10579750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 360
Target Start/End: Original strand, 14820597 - 14820873
Alignment:
Q  87 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 186  Q
    |||||||||| |||||||| || | | |||||| | | | ||| ||||| ||||||||||||| ||  |||||   ||  ||||| ||  ||||||||||    
T  14820597 ccaaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccc 14820696  T
Q  187 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagt 286  Q
    || |||| |||| ||||||| ||  |||||||||| |||||   |||||| ||| |||||||||||||| |  ||||||| | ||||||| | |||| ||    
T  14820697 acaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgt 14820796  T
Q  287 agcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 360  Q
    || ||||||  | ||| |    |||||||||| ||| ||| ||||||||||   |||||| ||| ||||||||||||    
T  14820797 agtttcactcctgaacaaaattctaagttcaaatgtttaagcttacaacatttccttaaaccttgacaaataccttc 14820873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 9410751 - 9410814
Alignment:
Q  232 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 295  Q
    |||||||||||| |||||||||||||  ||||||  ||||||||||| ||||| || |||||||    
T  9410751 tgtatgtgacaaattcaacacctccaacttgggagcttcaaagttcaatccaattaacttcact 9410814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 6586214 - 6586114
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    |||||||| | ||||| ||||||||||| ||  |||||||||||||| || |  ||| | |||||| | ||||||||| || ||||||| | ||||||||    
T  6586214 caaaagcctaggacaaatctttgagatcgcacagagtgtttcatcatgaacatctgtttttgacaaatccaacacctctagcttgggaagtacaaagttc 6586115  T
Q  278 a 278  Q
    |    
T  6586114 a 6586114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 89 - 407
Target Start/End: Original strand, 32267381 - 32267699
Alignment:
Q  89 aaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccac 188  Q
    |||||||| | ||| ||||||| | |||||||| ||| ||| ||||||||||||| ||||||||  ||||||  ||| ||| |||| | |||||||||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccac 32267480  T
Q  189 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 288  Q
     ||||||||||||||||| ||  |||| |||||||||||   |||| |||||||||||||| ||||||| |||||||| ||||||||||| | |   |||    
T  32267481 aacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tag 32267577  T
Q  289 cttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatc 385  Q
     |||||| || |||   | | ||||||||| |||||||| |||||||||   ||||||| || |   |||||||| || ||||||| ||  |||||  ||    
T  32267578 tttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctc 32267677  T
Q  386 aaatcaagcagttgcaaattgg 407  Q
    ||||||||||| ||||||||||    
T  32267678 aaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 442
Target Start/End: Complemental strand, 41889705 - 41889391
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    ||||||||||||| ||||| ||  | ||||  ||| |||||||| | | ||||||| | ||||||||||||||||  ||  ||||||||||||||||       
T  41889705 ttcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaactt 41889606  T
Q  231 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 330  Q
    |||||| ||| |||||||||||||||| |||||||| || |||||||| | |||||||||||||| || |||  |  | ||||||||| | |||||| ||    
T  41889605 ttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgtt 41889506  T
Q  331 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 427  Q
    |||||||   |||||||||| |  ||||||||| ||  |||||| ||  |||||  |||||||||| || |||||||| |||||||| |||| ||| |||    
T  41889505 acaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaaaatggaagcaaacatt 41889406  T
Q  428 ttgatggtttcatct 442  Q
     |||||  |||||||    
T  41889405 atgatgtcttcatct 41889391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 275
Target Start/End: Complemental strand, 41901795 - 41901542
Alignment:
Q  22 tctcaatgatggtcttgaaaataccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttttct 121  Q
    |||||| || ||||||||||||||||   |||  ||||||| | |||| | || ||||||||| | |||| |||| | ||||| |||||   ||||||||    
T  41901795 tctcaacgacggtcttgaaaataccatcaaagaaacaacattagcatgtactttaaaacaaccattcaaactaatctttctcaattgcgtacagttttct 41901696  T
Q  122 tctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcat 221  Q
     | | ||| ||||||||||||| ||||| ||  ||||||  ||  ||| |||| | |||||| |||| ||||||||||||||||| ||  |||| |||||    
T  41901695 accacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaagtgcttcat 41901596  T
Q  222 catcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||   |||||| ||||||||||||||||||||||||||||| ||||||||    
T  41901595 catcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 37937880 - 37937979
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||||||||||||||||  |||||||||| |||| |||||||| ||||||||| |||||||||| ||||| ||||||||| || ||||||| ||||||||    
T  37937880 tgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagt 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 20478188 - 20478025
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||| |||| || |||||||||||   | |||||| ||||||| | |||||| ||||||||||||||||||||| | ||||||| ||| ||    
T  20478188 tgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgt 20478089  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct 339  Q
    | | ||||||||||||| || ||  ||  | |||||||||||| || || | ||||||||||||    
T  20478088 ttattccaagtagcttcgctcttcgacatccagctaagttcaaatgccttaacttacaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 38267660 - 38267562
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 276  Q
    |||||||||||| ||  |||||||||| |||| |||||| ||||||||||  |||||||||| ||||| ||||||||| || ||||||| |||||||||    
T  38267660 caaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 41901510 - 41901398
Alignment:
Q  310 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 406  Q
    ||||||||| |||||||| ||||||||    |||||||||| |  ||||||||| ||  |||||| ||  |||||  ||||||||||||| |||||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattg 41901411  T
Q  407 gggaaaatcgaag 419  Q
    |||||||| ||||    
T  41901410 gggaaaatggaag 41901398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 412
Target Start/End: Original strand, 10614586 - 10614822
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||| |||  |||| |||||||||| |||||||| ||||| ||   | |||| ||||||||||||||||||||| |||||||   ||| ||    
T  10614586 tgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgt 10614685  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgcc 372  Q
    ||| |||||||||||||||||||  || |   ||||||||||| || |||||||||||||||   |||||||||| |||||||||||| |   ||| |      
T  10614686 tcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttcat---ataagag 10614782  T
Q  373 actgcaattaatcaaatcaagcagttgcaaattggggaaa 412  Q
    | |||||  | |||||||||||||||||||||||||||||    
T  10614783 attgcaacgattcaaatcaagcagttgcaaattggggaaa 10614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 359
Target Start/End: Complemental strand, 15092257 - 15092071
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    ||||||||||||| |||| ||||||||||| ||| |||||||| ||||| ||   |||| | |||||| |||||||||||||| | ||||| | ||||||    
T  15092257 tgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagt 15092158  T
Q  276 tcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaatacctt 359  Q
    ||| |||| |||| |||||  ||||||  | || ||||||||| ||| ||| |||| |||||   |||||||||| | |||||||||    
T  15092157 tcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaacttgagaaatacctt 15092071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 179 - 440
Target Start/End: Complemental strand, 1037767 - 1037503
Alignment:
Q  179 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    |||||||||| |||| |||||||||||| || ||||||||||||||||| || ||||||||||||||| |||||||| | ||  |||| || |||||| |    
T  1037767 aaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagttta 1037668  T
Q  279 gtccaagtagcttcacttttaaactacga-gctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccac 374  Q
     || |||||| |||||| || || ||  | ||||| ||||| ||||||| ||||||||||   ||||||||||||||||||||||| || ||||||  |     
T  1037667 ttctaagtagtttcactcttgaa-tagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttat 1037569  T
Q  375 tgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcat 440  Q
     |||     |||||||||| | |||||||||||||||||| |||| ||| | | ||||| ||||||    
T  1037568 ggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat 1037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 444
Target Start/End: Complemental strand, 32785876 - 32785610
Alignment:
Q  178 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 277  Q
    |||||||||| || ||||  ||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||| |||||||||  || |||||||    
T  32785876 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttc 32785777  T
Q  278 agtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgc 377  Q
    | || | |  |||  | | || ||    |  | || ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  ||    
T  32785776 attcgacggtgctcgattcttgaaaagtggtccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagc 32785677  T
Q  378 aattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 444  Q
    |||   |||||||||| |||||||||||||  ||||| |||||||| ||  ||||| ||||||||||    
T  32785676 aatagctcaaatcaagtagttgcaaattggaaaaaatagaagaaaacatcctgatgctttcatctct 32785610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 45245191 - 45245091
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 275  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||| | |||||| ||||||||||| ||||| |||| ||||||||    
T  45245191 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagt 45245092  T
Q  276 t 276  Q
    |    
T  45245091 t 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 295
Target Start/End: Complemental strand, 19468684 - 19468486
Alignment:
Q  97 ttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactc 196  Q
    |||||||||||| ||| | |||||||  | ||| |||||||| |||||||||| ||  |||||||  |  |  || || | |||||| |||| |||  ||    
T  19468684 ttctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccacaacagttc 19468585  T
Q  197 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 295  Q
    |||||||||||||  ||||||||||||||||   |||||| |||||| |||||||||||||| ||||||| | ||||||||| ||||||||| ||||||    
T  19468584 tttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcact 19468486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 7554393 - 7554554
Alignment:
Q  88 caaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccca 187  Q
    ||||||||| ||| | ||| ||| | |||||||| | | ||| ||||||||||| ||||||| ||| | ||| | ||| |||||||  || ||||| |||    
T  7554393 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcca 7554492  T
Q  188 cgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 249  Q
    | ||||||||||||||||| || ||||| ||||||||||| |||||||| ||| ||||||||    
T  7554493 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 52082582 - 52082676
Alignment:
Q  184 cccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 278  Q
    ||||| ||||||||||||||||||||  | |||||||||||||||  |||| | |||||||||||||||||||| ||||| || || ||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 52082676  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 361
Target Start/End: Original strand, 52092776 - 52092955
Alignment:
Q  182 agcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtc 281  Q
    ||||||| | ||||||||||||||||||  | ||| |||||||||||  |||| | || ||||||||||||||||| ||||| || || |||||||| |     
T  52092776 agcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcattg 52092875  T
Q  282 caagtagcttcacttttaaactacgagct-aagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcg 361  Q
     |||||| |||| | ||  || | || || |||||||| ||  |||| |||||||||||||||||||||  ||||||||||    
T  52092876 aaagtagattcaatgtt-gaccaagatctcaagttcaaatgagtaattttacaacatcttaaaacttcaacaataccttcg 52092955  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 9586632 - 9586729
Alignment:
Q  176 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaa 273  Q
    |||||||| ||||||||| || ||||| ||||||  ||||||||||||| || |  ||||| |||||||||||||||||| || ||||| | ||||||    
T  9586632 tgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggacttcaaa 9586729  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 43634891 - 43634979
Alignment:
Q  167 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctc 255  Q
    |||||||| | |||||| ||||||||| |||||||| ||||||  |||||| |||| ||||   |||||| ||||||||||||| ||||    
T  43634891 agtaacaaattcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacgcctc 43634979  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 29719074 - 29718956
Alignment:
Q  131 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 230  Q
    |||||||| |||||||||| |||  |||||| ||  |||||||| |||||||| |||| ||||||| |||| || | || ||||| || ||||||||       
T  29719074 ttcactccattctctgtgacattcatacaactttccagtaacaattgcaaaaggccacaacaactcgttgatatgatatggagtgatttatcatcaacgt 29718975  T
Q  231 ttgtatgtgacaagttcaa 249  Q
    | |||| ||||||||||||    
T  29718974 tggtatatgacaagttcaa 29718956  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 19468397 - 19468340
Alignment:
Q  384 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatc 441  Q
    ||||||||||||| ||||||||||| ||||| |||| ||| ||| ||||| |||||||    
T  19468397 tcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 9581276 - 9581332
Alignment:
Q  388 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 444  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9581332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 444
Target Start/End: Original strand, 9586766 - 9586900
Alignment:
Q  313 gttcaactgtctaatcttacaacatctt---aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgggg 409  Q
    |||||| |||||||||| ||||||||||   ||||||| ||||||||||   |  ||||||  || |||||    || ||||||||| ||||||||||||    
T  9586766 gttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgggg 9586865  T
Q  410 aaaatcgaagaaaatattttgatggtttcatctct 444  Q
    ||||| |||| ||| ||| ||||| ||| ||||||    
T  9586866 aaaattgaagcaaacattatgatgtttttatctct 9586900  T

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Target: scaffold0295 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 370
Target Start/End: Complemental strand, 724 - 533
Alignment:
Q  182 agcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtc 281  Q
    ||||||| |||| |||| ||||||| || ||||||||||||||| | |||||||||||||||||| |||||||| | ||  |||| || |||||| | ||    
T  724 agcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattc 625  T
Q  282 caagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatg 370  Q
     |||||| |||||| || |||     ||||| ||||| ||||||  ||||||||||   |||| |||||||||||||||||| || ||||||    
T  624 taagtagtttcactcttgaacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatg 533  T

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Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 291
Target Start/End: Original strand, 39176 - 39285
Alignment:
Q  175 gtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaag 274  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||| ||   |||||  || ||||||||||||||| ||       |||||||||    
T  39176 gtgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctcgag-------atttcaaag 39268  T
Q  275 ttcagtccaagtagctt 291  Q
    |||| ||||||||||||    
T  39269 ttcaatccaagtagctt 39285  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 88822 - 88924
Alignment:
Q  166 tagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttggga 265  Q
    |||| |||| |||||||||||| |||| |||||||||||||||| ||||| |||||| || ||  ||||   |||||||||||| |||||||||||| ||    
T  88822 tagttacaattgcaaaagcccatgacacctctttgagatcacatggagtgcttcatcgtctatgattgttcttgacaagttcaatacctccagtttgtga 88921  T
Q  266 att 268  Q
    |||    
T  88922 att 88924  T

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Target: scaffold0807 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 355
Target Start/End: Complemental strand, 1559 - 1388
Alignment:
Q  190 acaactctttgagatcacattgagtgtttcatc---atcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagt 286  Q
    |||| ||||||||||||||| ||||||||||||   ||||| | |||||| |||||||| ||||||||| || || |||| | ||||||||| | ||| |    
T  1559 acaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaat 1460  T
Q  287 agcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaata 355  Q
    || | |||   | |||  |  ||||||||||| |||||||||||| |||||   |||||||||| |||||||    
T  1459 aggtccacagatgaacaccaggctaagttcaaatgtctaatcttataacatctccttaaaacttgacaaata 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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