View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2473_low_1 (Length: 880)
Name: NF2473_low_1
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_1 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold1526 (1 HSPs) |
| | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 784; Significance: 0; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 1 - 870
Target Start/End: Complemental strand, 54738 - 53871
Alignment:
| Q |
1 |
tttaaagaccagatacacaaaactccaaaaagctaaaattgacaaaactcatcatcgcctttggagctcttcaaatctaaccgaaaagaagaattagcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54738 |
tttaaagaccagatacacaaaactccaaaaagttaaaattgacaaaactcatcatcgcctttggagctcttcaaatctaaccgaaaagaagaattagcag |
54639 |
T |
|
| Q |
101 |
ttgcaaaaacctacctagtcaggtatattgtgatgtacattagcacaattttaatgcaataacgctaccacaaactctttaaactatgtctagcacaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54638 |
ttgcaaaaacctacctagtcaggtatattgtgatgtacattagcacaattttaatgcaataacgctaccacaaactctttaaactatgtctagcacaatt |
54539 |
T |
|
| Q |
201 |
ttcggatatactattaagttaagtacgtaa-ttggttggtttgtgtatttgtccttgggatgacaagtatctataatggcacgaaaggttcaaaggattc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54538 |
ttcggatatactattaagttaagtacgtaaattggttggtttgtgtatttgtccttgggatgacaagtatctataatggcaagaaaggttcaaaggattc |
54439 |
T |
|
| Q |
300 |
aagttaataatcaattgcaaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgattgtcgggaaaatccaaca |
399 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54438 |
aagttaata-tcaattgcaaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgattgtcgggaaaatccaaca |
54340 |
T |
|
| Q |
400 |
agaaaaatattattaataacaataatttatatcttattgaaaattcacaaaaatcaattcaccaaaagttattactacacactatgagttattggttcag |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
54339 |
agaaaaatattattaataacaataatttatatcttattgaaaattctcaaaaatcaattcaccaaaagttattactacacactgtgaattattggttcag |
54240 |
T |
|
| Q |
500 |
aacaaattaattgactttgaggtatagaaagatctttttataggtaaatcttcctctttgtttatcaaccccttcgatgcgggacttttgacaggagtct |
599 |
Q |
| |
|
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54239 |
aacaaattaattggctttgaggtatagaagggtctttttataggtaaatcttcctctttatttatcaaccccttcgatgtgggacttttgacaggagtct |
54140 |
T |
|
| Q |
600 |
aatttatatgtcttgatacatatgctattctttacaacttttaacttgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtc |
699 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54139 |
aatttatatgtcttggtacacatgctattctttacaacttttaacttgttcaactttgggcttcattgcttagaataaatgttatttagtacaaaatgtc |
54040 |
T |
|
| Q |
700 |
tgagatgaaattgaatattactaagtcttagtaaatgagtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatg |
799 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54039 |
tgagatgaaattgaatatta--aagtcttagtaaatgagtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatg |
53942 |
T |
|
| Q |
800 |
atgttgctcctaatagtgatacaatacttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53941 |
atgttgctcctaatagtgatacaatacttactttctctctaacatcattccaatccggtccttcttctctc |
53871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 660 - 714
Target Start/End: Complemental strand, 37661 - 37607
Alignment:
| Q |
660 |
cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa |
714 |
Q |
| |
|
|||| ||||||||||||| |||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
37661 |
cttcgttgcatagaataattgttatttagaacaaaatttctacgatgaaattgaa |
37607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 488 - 716
Target Start/End: Original strand, 21221522 - 21221759
Alignment:
| Q |
488 |
ttattggttcagaacaaattaattgactttgaggtatagaaagatctttttataggtaaatcttcctctttgtttatcaaccccttcgatgcgggacttt |
587 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
21221522 |
ttattggttcagaacagattagttggctttgaggtatagaagcgtctttttataggtaaatctt--tctttgtttttcagccccttcgatgtgggacttt |
21221619 |
T |
|
| Q |
588 |
tgacaggagtctaatttatatgtcttgatac-----------atatgctattctttacaacttttaacttgttcaactttgggcttcattgcatagaata |
676 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||| |
|
|
| T |
21221620 |
tgacaggagtctattttatatatcttgatactgagaatttgtatatgctattctttacaactttgaacttgttcaattttgagctttgttgcatagaata |
21221719 |
T |
|
| Q |
677 |
aatgttatttagtacaaaatgtctgagatgaaattgaata |
716 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21221720 |
attgttatttagaacaaaatgtctgagatgaaattgaata |
21221759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 286 - 472
Target Start/End: Original strand, 21139385 - 21139571
Alignment:
| Q |
286 |
ggttcaaaggattcaagttaataatcaattgc-aaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgattgt |
384 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||| |||||| ||| ||||||| |||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
21139385 |
ggttcaaaggattcaagttgataatcaattggtaaatccttctattaaacagaagaaaaaaatgattatggattcttagttttttcagtaaattgaatgt |
21139484 |
T |
|
| Q |
385 |
cgggaaaatccaacaagaaaaatattattaataacaataatttatatcttattgaaaattcacaaaaatcaattcaccaaaagttatt |
472 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
21139485 |
tgaaaaaatcaaacaagaaaaatattattaataacaataatttatctcttattg-aaattctcaataatcaattcaccaaaagttatt |
21139571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 282 - 476
Target Start/End: Original strand, 21221296 - 21221481
Alignment:
| Q |
282 |
gaaaggttcaaaggattcaagttaataatcaattgcaaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgat |
381 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21221296 |
gaaaggttcaaagaatttatgttgataatcagttgcaaatccttctg--------aaagaaaaaataattatggattcttagttttttcagtaaattgat |
21221387 |
T |
|
| Q |
382 |
tgtcgggaaaatccaacaagaaaaatattattaataacaataatttatatcttattgaaaattcacaaaaatcaattcaccaaaagttattacta |
476 |
Q |
| |
|
||| | |||||| |||||||||||||||||||| ||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
21221388 |
tgttgaaaaaatcaaacaagaaaaatattattaacaacaataatttatctcttattg-agattctcaaaaatcaattcaccaaaagttattacta |
21221481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 646 - 734
Target Start/End: Original strand, 21140109 - 21140194
Alignment:
| Q |
646 |
tgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaagtcttagtaaa |
734 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21140109 |
tgttcaattttgggcttcgttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaatat---taagtcttagtaaa |
21140194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 488 - 614
Target Start/End: Original strand, 21139616 - 21139745
Alignment:
| Q |
488 |
ttattggttcagaacaaattaattgactttgaggtatagaaagatc---tttttataggtaaatcttcctctttgtttatcaaccccttcgatgcgggac |
584 |
Q |
| |
|
||||| |||||||||| ||||||| || ||||||||||| | || ||||||||||||||||||| |||| ||| ||| ||||||||||| || || |
|
|
| T |
21139616 |
ttattagttcagaacagattaattagctctgaggtatagacgggtcttttttttataggtaaatcttcgtcttaatttttcatccccttcgatgtggaac |
21139715 |
T |
|
| Q |
585 |
ttttgacaggagtctaatttatatgtcttg |
614 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
21139716 |
ttttgacaggagtctattttatatgtcttg |
21139745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 741 - 825
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
| Q |
741 |
ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata |
825 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| | || |||||||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21221835 |
ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata |
21221922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 21350063 - 21350148
Alignment:
| Q |
8 |
accagatacacaaaactccaaaaagctaaaattgacaaaactcatcatcgcctttggagctcttcaaatctaaccgaaaagaagaa |
93 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||| ||| |||| |||||| |||||| |||| |||||| |||||||||| |
|
|
| T |
21350063 |
accaaatacacaaaactcaaaaaagttaaaattgacaaaattcaacatctcctttgaagctctccaaacctaacccaaaagaagaa |
21350148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 21310219 - 21310294
Alignment:
| Q |
18 |
caaaactccaaaaagctaaaattgacaaaactcatcatcgcctttggagctcttcaaatctaaccgaaaagaagaa |
93 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | |||| | ||||||||||| |||| |||||| |||||||||| |
|
|
| T |
21310219 |
caaatctccaaaaagctaaaattgacaaaaccaaacatctcttttggagctctccaaacctaacccaaaagaagaa |
21310294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 21221229 - 21221278
Alignment:
| Q |
195 |
acaattttcggatatactattaagttaagtacgt-aattggttggtttgt |
243 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21221229 |
acaattttcagatatactattaagttaagtacgtaaattggttggtttgt |
21221278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 658
Target Start/End: Original strand, 21181515 - 21181555
Alignment:
| Q |
618 |
catatgctattctttacaacttttaacttgttcaactttgg |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21181515 |
catatgctattctttacaacttttaacttgttcaattttgg |
21181555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 666 - 714
Target Start/End: Complemental strand, 21246005 - 21245957
Alignment:
| Q |
666 |
tgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa |
714 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
21246005 |
tgcatagaataattgttatttataacaaaatgtatgagatgaaattgaa |
21245957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 660 - 714
Target Start/End: Original strand, 21200685 - 21200739
Alignment:
| Q |
660 |
cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa |
714 |
Q |
| |
|
|||| ||||||| | ||| |||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
21200685 |
cttcgttgcataaagtaattgttatttagaacaaaatgtctaagatgaaattgaa |
21200739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 21316294 - 21316367
Alignment:
| Q |
14 |
tacacaaaactccaaaaagctaaaattgacaaaactcatcatcgcctttggagctcttcaaatctaaccgaaaa |
87 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||| |||| ||||||||||| ||| |||||| |||| |
|
|
| T |
21316294 |
tacacaaatctctaaaaagttaaaattgacaaaactcaacatcttgtttggagctctccaagcctaacccaaaa |
21316367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 826 - 870
Target Start/End: Complemental strand, 1304 - 1260
Alignment:
| Q |
826 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1304 |
cttactttctctctaacatcattccaatccggtccttcttctctc |
1260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 826 - 870
Target Start/End: Original strand, 15707358 - 15707402
Alignment:
| Q |
826 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15707358 |
cttactttctctctaacatcattccaatccggtccttcttctctc |
15707402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 826 - 870
Target Start/End: Original strand, 3378229 - 3378273
Alignment:
| Q |
826 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3378229 |
cttactttctctctaacatcattccaatccggtccttcttctctc |
3378273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 826 - 870
Target Start/End: Original strand, 4102 - 4146
Alignment:
| Q |
826 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
4102 |
cttactttctctctaacatcattccaatccggttcttcttctctc |
4146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 826 - 870
Target Start/End: Original strand, 14014 - 14058
Alignment:
| Q |
826 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
14014 |
cttactttctctctaacatcattccaatccggttcttcttctctc |
14058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 826 - 870
Target Start/End: Complemental strand, 24967 - 24923
Alignment:
| Q |
826 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
24967 |
cttactttctctctaacatcattccaatccggttcttcttctctc |
24923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 826 - 870
Target Start/End: Original strand, 44495504 - 44495548
Alignment:
| Q |
826 |
cttactttctctctaacatcattccaatccggtccttcatctctc |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
44495504 |
cttactttctctctaacatcattccaatccggttcttcttctctc |
44495548 |
T |
|
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