View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_low_11 (Length: 428)
Name: NF2473_low_11
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 4569980 - 4569579
Alignment:
| Q |
13 |
cacccaccaccatgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgccgccacactccgctaccacaaccac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569980 |
cacccaccaccatgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgccgccacactccgctaccacaaccac |
4569881 |
T |
|
| Q |
113 |
cgcctcgaactcttctgctccaaaagccaagacagcgttcctctcattcacgccaccgtagacatcactctcgaatccgtaaactacctcgacgacgacc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569880 |
cgcctcgaactcttctgctccaaaagccaagacagcgttcctctcatccacgccaccgtagacatcactctcgaatccgtaaactacctcgacgacgacc |
4569781 |
T |
|
| Q |
213 |
catcttcccattttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatgcatgcttcaactcactgtttacaagtgcggtgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569780 |
catcttcccattttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatgcatgcttcaactcactgtttacaagtgcggtgg |
4569681 |
T |
|
| Q |
313 |
gttcactctcggtgcagcaattcaccattcactttgtgatggaatgggtgggacgcnnnnnnncaacacgatggcggagttggctcgtggcggggaacat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4569680 |
gttcactctcggtgcagcaattcaccattcactttgtgatggaatgggtgggacgctttttttcaacacgatggcggagttggctcgtggcggggaacat |
4569581 |
T |
|
| Q |
413 |
at |
414 |
Q |
| |
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|| |
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| T |
4569580 |
at |
4569579 |
T |
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