View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2473_low_12 (Length: 397)
Name: NF2473_low_12
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 8270192 - 8270566
Alignment:
| Q |
12 |
atgaaggtagttaaaacgggtaggtagacactagacaagcttaaatcagggacataaaattggaagttcaaagtattggtgagggtgaggacgtgtatgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270192 |
atgaaggtagttaaaacgggtaggtagacactagacaagcttaaatcagggacataaaattggaagttcaaagtattggtgagggtgaggacgtgtatgt |
8270291 |
T |
|
| Q |
112 |
gttgtgtgataagaggaattgtgtgactatgatatgagatgtcatcactcatcaatgtgaggagtaaattgtttatggaccaatgaacttcttgtcctat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270292 |
gttgtgtgataagaggaattgtgtgactatgatatgagatgtcatcactcatcaatgtgaggagtaaattgtttatggaccaatgaacttcttgtcctat |
8270391 |
T |
|
| Q |
212 |
tactagtacgaagcaacttacaatatggccctccaagtgggttaacaaattaaatgatgtggtggatcgtaatagaag-----annnnnnnnataagaaa |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8270392 |
tactagtacgaaacaacttacaatatggccctccaagtgggttaacaaattaaatgatgtggtggatcgtaatagaagttttttttttttttataagaaa |
8270491 |
T |
|
| Q |
307 |
tcgaagaattttgtttgaacacgcatttttcaacatacttcttatctcttaaatttgttaaatttcatttgaatt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8270492 |
tcgaagaattttgtttgaacacgcatttttcaacatacttcttatctcttaaatctgttaaatttcatttgaatt |
8270566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University