View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2473_low_15 (Length: 356)
Name: NF2473_low_15
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 39564205 - 39564548
Alignment:
| Q |
1 |
atttcaagtaattgagaaactaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39564205 |
atttcaagtaattgagaaactaacctttctagtttcagcattgatgtctggggacaaccggagccatgctgaatagagcaaagattcatagacagtaaca |
39564304 |
T |
|
| Q |
101 |
taaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564305 |
taaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatat |
39564404 |
T |
|
| Q |
201 |
atcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39564405 |
atcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctgaaagctcc |
39564504 |
T |
|
| Q |
301 |
acttacacccttcaaaagaaccaacttatcctcaacaacaccta |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564505 |
acttacacccttcaaaagaaccaacttatcctcaacaacaccta |
39564548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 39547444 - 39547768
Alignment:
| Q |
19 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
39547444 |
actaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatca |
39547543 |
T |
|
| Q |
119 |
ttttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctac |
218 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
39547544 |
gtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctac |
39547643 |
T |
|
| Q |
219 |
cagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39547644 |
cagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
39547743 |
T |
|
| Q |
319 |
aaccaacttatcctcaacaacacct |
343 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39547744 |
aaccaacttatcctcaacaacacct |
39547768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 39338877 - 39338548
Alignment:
| Q |
19 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
39338877 |
actaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatca |
39338778 |
T |
|
| Q |
119 |
ttttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctac |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||| |
|
|
| T |
39338777 |
gtttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttgatgttcccaccaatatatccaccagtttttctac |
39338678 |
T |
|
| Q |
219 |
cagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39338677 |
cagaaagcacatccatcagagttgttttcccagcaccggtgatgcccatcagagcggtgagaacacctggtctgaaagctccacttacacccttcaaaag |
39338578 |
T |
|
| Q |
319 |
aaccaacttatcctcaacaacacctatgtt |
348 |
Q |
| |
|
||| ||||||||||||| ||||||| |||| |
|
|
| T |
39338577 |
aactaacttatcctcaagaacacctctgtt |
39338548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 39366229 - 39365906
Alignment:
| Q |
20 |
ctaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
39366229 |
ctaacctttctggtttcagcattgatgtcaggggacaatcggagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcag |
39366130 |
T |
|
| Q |
120 |
tttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctacc |
219 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
39366129 |
tttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctacc |
39366030 |
T |
|
| Q |
220 |
agaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| |||| |
|
|
| T |
39366029 |
agaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaaga |
39365930 |
T |
|
| Q |
320 |
accaacttatcctcaacaacacct |
343 |
Q |
| |
|
|| ||||||||||||| ||||||| |
|
|
| T |
39365929 |
actaacttatcctcaataacacct |
39365906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 39353720 - 39353404
Alignment:
| Q |
19 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39353720 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccatgttggatagagcaaagattcatagacagtaacataaggagaatggatatca |
39353621 |
T |
|
| Q |
119 |
ttttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctac |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
39353620 |
gtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtgatgttcccaccaatatatccaccggtttttctac |
39353521 |
T |
|
| Q |
219 |
cagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| || | ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
39353520 |
cagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacctggtctgaaagctccacttacaccctttaaaag |
39353421 |
T |
|
| Q |
319 |
aaccaacttatcctcaa |
335 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
39353420 |
aactaacttatcttcaa |
39353404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 39537986 - 39538310
Alignment:
| Q |
19 |
actaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatca |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39537986 |
actaaccttcctggtttcagcattgatgtctggagacaaccggagccatgctgaatagagcaaagattcatagacagtaacataaggagaatggatatca |
39538085 |
T |
|
| Q |
119 |
ttttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctac |
218 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
39538086 |
gtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtgatgttcccaccaatatatccaccagtttttctac |
39538185 |
T |
|
| Q |
219 |
cagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||| |
|
|
| T |
39538186 |
cagaaagcacatccatcagagttgttttgcctgcacccgtgacgcccatcagagcagtgagaacacctggtctgaaagctccactgagacctttcaaaag |
39538285 |
T |
|
| Q |
319 |
aaccaacttatcctcaacaacacct |
343 |
Q |
| |
|
||||||| ||| ||||||||||||| |
|
|
| T |
39538286 |
aaccaacatattctcaacaacacct |
39538310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 62 - 334
Target Start/End: Original strand, 39589315 - 39589587
Alignment:
| Q |
62 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
161 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
39589315 |
agccatgctgaatagagcaaagattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgct |
39589414 |
T |
|
| Q |
162 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
261 |
Q |
| |
|
|||| ||| | || |||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||| || ||| ||||| |||||||| || || |
|
|
| T |
39589415 |
tcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgac |
39589514 |
T |
|
| Q |
262 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctca |
334 |
Q |
| |
|
||||| | |||||||||||||||||| || ||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39589515 |
gcccattaaagcagtgagaacaccaggcctaaaaattccactgacacctttcaaaagaaccaacttatcctca |
39589587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 55 - 335
Target Start/End: Original strand, 39575070 - 39575350
Alignment:
| Q |
55 |
caaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtt |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||| || ||||||||| |||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
39575070 |
caaccggagccatgctgaatagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtt |
39575169 |
T |
|
| Q |
155 |
tcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcac |
254 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||||||||| ||||||||| || |||||||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
39575170 |
tcttgctttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcac |
39575269 |
T |
|
| Q |
255 |
cggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaa |
335 |
Q |
| |
|
| || |||||||| || |||||||||||||| || || |||||||| || ||||| |||||||||||||||||||| |||| |
|
|
| T |
39575270 |
cagtgacacccataagtgcagtgagaacacctggcctaaaagctccgctgacaccgttcaaaagaaccaacttatcttcaa |
39575350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 315
Target Start/End: Original strand, 39622043 - 39622336
Alignment:
| Q |
22 |
aacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattt |
121 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| |||||||| || ||| ||||||| |||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
39622043 |
aaccttcctggtttcagcattgatttctgcagacaatcggagccatgccgaaaagagcaatgattcatatacagtaacataaggagaatggatataattt |
39622142 |
T |
|
| Q |
122 |
tgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccag |
221 |
Q |
| |
|
|| |||||||| ||| ||| ||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||||| |||||| || |||| |
|
|
| T |
39622143 |
tgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttccag |
39622242 |
T |
|
| Q |
222 |
aaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaa |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||| | ||||| ||||| ||||| |
|
|
| T |
39622243 |
ctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa |
39622336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 1084781 - 1085013
Alignment:
| Q |
20 |
ctaacctttctggtttcagcattgatgtctggggacaaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcat |
119 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | || ||| |||||||| ||||||||||||||||| || |||||||||| || |||||| |||||||| |
|
|
| T |
1084781 |
ctaaccttcctggtttcagcattaatgtccgaggtcaatcggagccatgctgaatagagcaaagactcgtagacagtaaaatgaggagaatggatatcta |
1084880 |
T |
|
| Q |
120 |
tttgctcacagtacccagaaattcttgcaaaggtttcttgc--ttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttccta |
217 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||||| |||| |||| |||| |||||| |||||||||||||||||||||| | ||||| ||| |
|
|
| T |
1084881 |
tttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaattatgatgttcccaccaatatatccatcagtttttcta |
1084980 |
T |
|
| Q |
218 |
ccagaaagcacatccatcagagttgttttgccag |
251 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |
|
|
| T |
1084981 |
ccag-aagcacatccatcaaagttgttttgccag |
1085013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 42133041 - 42133090
Alignment:
| Q |
80 |
aaagattcatagacagtaacataaggagagtggatatcattttgctcaca |
129 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || ||||||||||||||||| |
|
|
| T |
42133041 |
aaagattcatagacagttacatagggagaatgaatatcattttgctcaca |
42133090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 1085062 - 1085123
Alignment:
| Q |
192 |
caccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcac |
254 |
Q |
| |
|
||||||| ||||| | ||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
1085062 |
caccaatgtatccatcagtttttctaccagaa-gcacatccatcaaagttgttttgccagcac |
1085123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 62 - 318
Target Start/End: Original strand, 44223164 - 44223420
Alignment:
| Q |
62 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
161 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||||| || || ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
44223164 |
agccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct |
44223263 |
T |
|
| Q |
162 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
261 |
Q |
| |
|
| || || | || |||| |||||| ||| |||||||||| || ||||||||||||| || |||||||||||||||||||| ||||| || | || |
|
|
| T |
44223264 |
ttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttac |
44223363 |
T |
|
| Q |
262 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||| || ||||| |||||||||||||| |
|
|
| T |
44223364 |
acccatcaaagctgtgagaacaccgggcctgaatgcaccactaacacccttcaaaag |
44223420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 318
Target Start/End: Original strand, 44233986 - 44234242
Alignment:
| Q |
62 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
161 |
Q |
| |
|
||||||||||| || |||||||| ||||| || ||||||| ||| || ||||||||||| ||||||||||| || || ||||| ||||| |||||||||| |
|
|
| T |
44233986 |
agccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattctgctcacagtaaccggagattctagcaaatgtttcttgct |
44234085 |
T |
|
| Q |
162 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
261 |
Q |
| |
|
| || ||| | || |||| |||||| ||| |||||||||| || ||||||||||||| || |||||||||||||||||||| ||||| || | || |
|
|
| T |
44234086 |
ttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttac |
44234185 |
T |
|
| Q |
262 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
|||||||| ||| || || |||||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
44234186 |
acccatcaaagccgtaagtacaccaggcctgaatgcgccactaacacccttcaaaag |
44234242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 318
Target Start/End: Original strand, 44211023 - 44211258
Alignment:
| Q |
83 |
gattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattg |
182 |
Q |
| |
|
|||||||| || ||||||| ||| || || |||||||| || |||||||| ||||| ||||| ||||| ||||||||||| || || | || |||| |
|
|
| T |
44211023 |
gattcataaactgtaacatgaggtgaatgaatatcattctgttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaacct |
44211122 |
T |
|
| Q |
183 |
tgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaac |
282 |
Q |
| |
|
|||||| ||| |||||||||| || ||||||||||||| || |||||||||||||||||||| ||||| || | |||||||||| ||| |||||||| |
|
|
| T |
44211123 |
tgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaac |
44211222 |
T |
|
| Q |
283 |
accaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
||| || ||||| || || || |||||||||||||| |
|
|
| T |
44211223 |
accgggcctgaatgcaccgctaacacccttcaaaag |
44211258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 43457605 - 43457669
Alignment:
| Q |
110 |
tggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagcc |
174 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
43457605 |
tggatatcggtttgttcgcagtatccagaaattcttgcaaatgtttcttgattcttagggaagcc |
43457669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 62 - 318
Target Start/End: Complemental strand, 2877367 - 2877111
Alignment:
| Q |
62 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
161 |
Q |
| |
|
||||| |||||||| || || || |||||||||||||| | ||| |||||||||||||| |||||||| || ||||| ||||| ||||| |||||||||| |
|
|
| T |
2877367 |
agccaagctgaatacagtaaggactcatagacagtaacttgaggggagtggatatcattctgctcacaatagccagagattctagcaaatgtttcttgct |
2877268 |
T |
|
| Q |
162 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
261 |
Q |
| |
|
| || || | || |||||| | ||| ||||| ||||||| || | ||||||||||||| | |||||||||| ||| ||||| ||||| || | || |
|
|
| T |
2877267 |
ttttagggtaaccagaaatttttatgctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagctccactaac |
2877168 |
T |
|
| Q |
262 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| || || ||||| || ||||||||||| |
|
|
| T |
2877167 |
acccatcaaagctgtgagaacaccaggtctaaatgcaccactaactcccttcaaaag |
2877111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 318
Target Start/End: Complemental strand, 2887110 - 2886878
Alignment:
| Q |
86 |
tcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtga |
185 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||| || ||||| |||| ||||| |||||||| || || || | || |||||| | | |
|
|
| T |
2887110 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
2887011 |
T |
|
| Q |
186 |
tgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacacc |
285 |
Q |
| |
|
|| |||| ||||||| || || ||||||||||||| | |||||||| | ||| ||||| ||||| || | || ||||| | || ||||||||||| |
|
|
| T |
2887010 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacacc |
2886911 |
T |
|
| Q |
286 |
aggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
||| || || || ||||| |||||||||||||| |
|
|
| T |
2886910 |
aggcctaaatgcaccactaacacccttcaaaag |
2886878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 343
Target Start/End: Original strand, 2897266 - 2897523
Alignment:
| Q |
86 |
tcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtga |
185 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||| || ||||| |||| ||||| |||||||| | || | |||| |||||| | | |
|
|
| T |
2897266 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaattttta |
2897365 |
T |
|
| Q |
186 |
tgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagcagtgagaacacc |
285 |
Q |
| |
|
|| | ||| | ||||| || |||||||| ||||||| | |||||||| | ||| ||||| ||||| || | || ||||| | || ||||||||||| |
|
|
| T |
2897366 |
tggtgccatcgatataaccaccggtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacacc |
2897465 |
T |
|
| Q |
286 |
aggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaacaacacct |
343 |
Q |
| |
|
||| || || || ||||| |||||||||||||| || || ||||||| || |||||| |
|
|
| T |
2897466 |
aggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacacct |
2897523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 318
Target Start/End: Complemental strand, 49773328 - 49773066
Alignment:
| Q |
56 |
aaccggagccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggttt |
155 |
Q |
| |
|
||||||||||| || ||||| | | |||||||||||||||||||| ||||||||||||||| ||||||||||||| || || || | | ||| |||| |
|
|
| T |
49773328 |
aaccggagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgttt |
49773229 |
T |
|
| Q |
156 |
cttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcacc |
255 |
Q |
| |
|
|||||||||| || | ||||| || ||||| | || || ||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| || |
|
|
| T |
49773228 |
cttgcttcttagggtacccggatatagtgatttgtccttgaacatatcctgttgttttccttccagacagcacatccattagagttgttttaccagctcc |
49773129 |
T |
|
| Q |
256 |
ggtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
| | |||||| ||||| || ||||| || ||||| ||||||||| | ||||| ||||||| |
|
|
| T |
49773128 |
acttatacccattagagctgtcagaactcctggtctaaaagctccattaacacctgtcaaaag |
49773066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 318
Target Start/End: Original strand, 2160857 - 2161113
Alignment:
| Q |
62 |
agccacgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct |
161 |
Q |
| |
|
||||| || ||||| | |||||||||||| || ||||||| ||| || ||||||||| |||||| || || || || || | ||||| |||| ||| | |
|
|
| T |
2160857 |
agccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaatgttttttgat |
2160956 |
T |
|
| Q |
162 |
tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
261 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||| |||||||||| || |||||||| |||| | |||||||| ||||| || || || ||||| | || |
|
|
| T |
2160957 |
tctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccggcaccacttac |
2161056 |
T |
|
| Q |
262 |
acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag |
318 |
Q |
| |
|
|||||||| |||||| || || ||||| || || || ||| | | |||||||||||| |
|
|
| T |
2161057 |
acccatcaaagcagttagtactccaggcctaaaggcgccattgatacccttcaaaag |
2161113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 4501349 - 4501297
Alignment:
| Q |
113 |
atatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctt |
165 |
Q |
| |
|
|||||| |||| ||||| || ||||||| |||||||||||||||||| ||||| |
|
|
| T |
4501349 |
atatcagtttgttcacaataaccagaaactcttgcaaaggtttcttggttctt |
4501297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University