View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_low_17 (Length: 308)
Name: NF2473_low_17
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 2336820 - 2337000
Alignment:
| Q |
14 |
atatttgcattttcttttctcaaatggatcccaactagtggaactctactataactatatgcaaaccccaatcgatgatggttctcgaaatttttaatct |
113 |
Q |
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| T |
2336820 |
atatttgcattttcttttgtcaaatggatcccaactagtggaactctactataattatatgcaaaccccaatcgatgatggttctcgatattttcaatct |
2336919 |
T |
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| Q |
114 |
ttgacgtatctacgaccaccactccctaaagtgacagttcttaatatcccaaatcttttatgtttcaatcaacaccattcc |
194 |
Q |
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| T |
2336920 |
ttgacgtatctacgaccaccactccttaaagtgacagttcttaatatcccaaatcttttatgtttcaatcaccaccattcc |
2337000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 166 - 289
Target Start/End: Original strand, 2337029 - 2337151
Alignment:
| Q |
166 |
atcttttatgtttcaatcaacaccattccctaccgatgagagttctaaaaatctacgacattttatttttcaatcacctaacgctgaaccgaaatcacca |
265 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2337029 |
atcttttatggtt-aatcaacaccattccctaccgatgagagttctcaaaatctacgacattttatttttcaatcacctaacgctgaaccgaaatcatca |
2337127 |
T |
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| Q |
266 |
attggatccactgttgattgttcg |
289 |
Q |
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| T |
2337128 |
attagatccactgttgattgttcg |
2337151 |
T |
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