View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_low_19 (Length: 305)
Name: NF2473_low_19
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_19 |
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| [»] chr3 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 38028437 - 38028149
Alignment:
| Q |
17 |
aacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaat |
116 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
38028437 |
aacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggcctaat |
38028338 |
T |
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| Q |
117 |
aataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38028337 |
aataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttcat |
38028238 |
T |
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| Q |
217 |
ctaggaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaac |
305 |
Q |
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| T |
38028237 |
ctaggaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaac |
38028149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 38033471 - 38033190
Alignment:
| Q |
17 |
aacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaat |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38033471 |
aacaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaat |
38033372 |
T |
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| Q |
117 |
aataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcat |
216 |
Q |
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| T |
38033371 |
aataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttcat |
38033272 |
T |
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| Q |
217 |
ctaggaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaactta |
298 |
Q |
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| T |
38033271 |
ctagggagagatattaagctaaaatgaaaaaagaaagctcctccaactattccaagtccagtgagattcaatcatcaactta |
38033190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 291
Target Start/End: Complemental strand, 38036444 - 38036200
Alignment:
| Q |
40 |
ttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattat |
139 |
Q |
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| T |
38036444 |
ttataatgatgagataagggtatgtgctgtaagcagtatcgagat-cgaatattcctgcaaatttctctgac---ataataacacattcagccaaactat |
38036349 |
T |
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| Q |
140 |
aatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctaggaagatctattaagctaaa |
239 |
Q |
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| T |
38036348 |
a-tagtgtataagctatcttggatcaaagctcacaaattttt-acttgtcttgtgcttctatccactgctttttcatctaggcagagaaattaagctata |
38036251 |
T |
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| Q |
240 |
atgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcat |
291 |
Q |
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| T |
38036250 |
at-aaaaatgaaagctcctctaactattccaagtcccatgagattcaatcat |
38036200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 305
Target Start/End: Complemental strand, 38039652 - 38039470
Alignment:
| Q |
121 |
aaacattcagccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctag |
220 |
Q |
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||||||||| ||||| | |||||||||||| ||||| || |||| ||||||| | |||||||| ||||||||||||||| |||||||||||| |
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| T |
38039652 |
aaacattcaaccaaactgtaatagttgataagttatattcgatctaagctca-atttcttttacatgtcctgtgcttctatcaactgattcttcatctag |
38039554 |
T |
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| Q |
221 |
gaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaac |
305 |
Q |
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| | | | | ||||||||||| ||| |||||||||| |||||||||||||||| ||||| ||||| |||| ||||||||||||| |
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| T |
38039553 |
gcaaaacaactaagctaaaat-aaataagaaagctcttccaactattccaagttccgtgggattcaatcaccaacttacacaaac |
38039470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 41 - 297
Target Start/End: Original strand, 50910450 - 50910699
Alignment:
| Q |
41 |
tataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattata |
140 |
Q |
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||||||||||||||||| | || | ||||||| ||| ||||||| | |||||||||||||| |||| |||||||||| |||||||||||||| || | |
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| T |
50910450 |
tataatgatgacataagagaatgtgctgtaagcaatatcgagct-cgaatattcctgcaaatttct--ggcctaataa---aacattcagccaaactaaa |
50910543 |
T |
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| Q |
141 |
atagttgataggttatcttagatccaagctcacaannnnnnn-acatgtccattgcttctatcaactgcttcttcatctaggaagatctattaagctaaa |
239 |
Q |
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||||||||| || ||||| |||| |||||||||| |||||| ||||||||| || |||||||||||||||| |||| |||| |||| |
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| T |
50910544 |
gtagttgataagt-atcttggatctaagctcacaattttttttacatgtattgtgcttctattaattgcttcttcatctaggcagatgaattaggctatg |
50910642 |
T |
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| Q |
240 |
atgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaactt |
297 |
Q |
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|| ||| |||||| |||||||||||||||| ||||| ||||||||| ||||| ||||| |
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| T |
50910643 |
at-aaataagaaaactcctccaactattcctagtccagtgagattcaatcatcaactt |
50910699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 21604425 - 21604137
Alignment:
| Q |
17 |
aacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaat |
116 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
21604425 |
aacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggcctaat |
21604326 |
T |
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| Q |
117 |
aataaaacattcagccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21604325 |
aataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttcat |
21604226 |
T |
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| Q |
217 |
ctaggaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaac |
305 |
Q |
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| T |
21604225 |
ctagggagagctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgcgagattccatcattaacttgcacaaac |
21604137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 305
Target Start/End: Complemental strand, 21609370 - 21609188
Alignment:
| Q |
121 |
aaacattcagccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctag |
220 |
Q |
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||||||||| ||||| | |||||||||||| ||||| || |||| ||||||| | |||||||| ||||||||||||||| |||||||||||| |
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| T |
21609370 |
aaacattcaaccaaactgtaatagttgataagttatattcgatctaagctca-atttcttttacatgtcctgtgcttctatcaactgattcttcatctag |
21609272 |
T |
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| Q |
221 |
gaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaac |
305 |
Q |
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| | | | | ||||||||||| ||| |||||||||| |||||||||||||||| ||||| ||||| |||| ||||||||||||| |
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| T |
21609271 |
gcaaaacaactaagctaaaat-aaataagaaagctcttccaactattccaagttccgtgggattcaatcaacaacttacacaaac |
21609188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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