View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2473_low_25 (Length: 243)

Name: NF2473_low_25
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2473_low_25
NF2473_low_25
[»] chr6 (5 HSPs)
chr6 (11-229)||(2920904-2921122)
chr6 (8-148)||(18246511-18246651)
chr6 (69-226)||(1034201-1034358)
chr6 (70-121)||(10232769-10232820)
chr6 (20-109)||(32548930-32549018)
[»] chr4 (2 HSPs)
chr4 (8-148)||(16989586-16989726)
chr4 (186-228)||(52116292-52116334)
[»] chr3 (3 HSPs)
chr3 (8-148)||(1259258-1259398)
chr3 (8-148)||(37242546-37242686)
chr3 (43-121)||(53553650-53553728)
[»] chr7 (2 HSPs)
chr7 (11-148)||(31234713-31234850)
chr7 (43-229)||(42460101-42460287)
[»] chr5 (1 HSPs)
chr5 (55-229)||(36988928-36989102)
[»] chr1 (4 HSPs)
chr1 (43-225)||(32774127-32774309)
chr1 (20-136)||(46594840-46594956)
chr1 (80-122)||(17257069-17257111)
chr1 (189-231)||(19586680-19586722)
[»] chr2 (4 HSPs)
chr2 (41-231)||(11272428-11272617)
chr2 (36-109)||(33858647-33858720)
chr2 (69-226)||(1479471-1479628)
chr2 (114-226)||(13016924-13017036)
[»] chr8 (5 HSPs)
chr8 (55-226)||(8273738-8273909)
chr8 (43-231)||(37269843-37270030)
chr8 (43-231)||(42941137-42941325)
chr8 (43-229)||(9936295-9936481)
chr8 (43-136)||(36404064-36404157)
[»] scaffold0760 (1 HSPs)
scaffold0760 (43-176)||(1722-1855)
[»] scaffold0495 (1 HSPs)
scaffold0495 (70-121)||(9492-9543)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 2920904 - 2921122
Alignment:
Q  11 cacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2920904 cacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttt 2921003  T
Q  111 aacctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921004 aacctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttcct 2921103  T
Q  211 tccaaatcgaccaaatagt 229  Q
    |||||||||||||||||||    
T  2921104 tccaaatcgaccaaatagt 2921122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 18246511 - 18246651
Alignment:
Q  8 cagcacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatc 107  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  18246511 cagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatc 18246610  T
Q  108 ttcaacctactcaacatccaaacccaagaaagtgctttaat 148  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  18246611 ttcaacctactcaacatccaaacccaagaaagcgctttaat 18246651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 1034358 - 1034201
Alignment:
Q  69 ggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctcca 168  Q
    |||||||| |||||||||||||||||||| || |||||||| || ||||||||| |||||||||||||||  |||||||| || ||||| || ||  | |    
T  1034358 ggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaacccaagaaaccgctttaatctcatccactatctcaccaa 1034259  T
Q  169 catccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaat 226  Q
    | ||||||  || |||||| || |||||||| |||||||||||||||||| |||||||    
T  1034258 cctccttcgctttgttattaaaaatccttgcatttctttccttccaaatcaaccaaat 1034201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 10232820 - 10232769
Alignment:
Q  70 gattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaa 121  Q
    |||||||  |||||||||||||||||||||||||||||||||  ||||||||    
T  10232820 gattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaa 10232769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 32549018 - 32548930
Alignment:
Q  20 gcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatctt 109  Q
    ||||||||||||| | |||  | |||||||||| |||||||||| ||  |||||| | ||||||| |||||||| |||||||||||||||    
T  32549018 gcagattcaaaaaaacagcacccttcatcttctatttagacattatctaggattctaagtccacttataaaaga-gaaagaagctatctt 32548930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 16989726 - 16989586
Alignment:
Q  8 cagcacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatc 107  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  16989726 cagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaagctatc 16989627  T
Q  108 ttcaacctactcaacatccaaacccaagaaagtgctttaat 148  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  16989626 ttcaacctactcaacatccaaacccaagaaagcgctttaat 16989586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 52116292 - 52116334
Alignment:
Q  186 ttgaagatccttgcgtttctttccttccaaatcgaccaaatag 228  Q
    ||||| |||||||||||||||||||||||||||  ||||||||    
T  52116292 ttgaaaatccttgcgtttctttccttccaaatcatccaaatag 52116334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 1259258 - 1259398
Alignment:
Q  8 cagcacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatc 107  Q
    ||||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  1259258 cagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatc 1259357  T
Q  108 ttcaacctactcaacatccaaacccaagaaagtgctttaat 148  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  1259358 ttcaacctactcaacatccaaacccaagaaagcgctttaat 1259398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 37242546 - 37242686
Alignment:
Q  8 cagcacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatc 107  Q
    ||||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  37242546 cagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatc 37242645  T
Q  108 ttcaacctactcaacatccaaacccaagaaagtgctttaat 148  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  37242646 ttcaacctactcaacatccaaacccaagaaagcgctttaat 37242686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 53553650 - 53553728
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaa 121  Q
    ||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  53553650 ttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctactcaa 53553728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 31234713 - 31234850
Alignment:
Q  11 cacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttc 110  Q
    |||| ||||||||||||||||||| || |  ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  31234713 cacaaaaaggcagattcaaaaagacagtcgtgttcatcttctgtttagacattctcgtggattccaagtccactcatagaagaggaaagaagctatcttc 31234812  T
Q  111 aacctactcaacatccaaacccaagaaagtgctttaat 148  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31234813 aacctactcaacatccaaacccaagaaagcgctttaat 31234850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 42460101 - 42460287
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgc 142  Q
    |||||||||| ||||| || ||||  |||||||| ||| |||||||||||||||| || |||||||| | ||| ||||  ||||| |||||||| |  ||    
T  42460101 ttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccacacccaagacaccgc 42460200  T
Q  143 tttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagt 229  Q
    |||||| || ||||| |  ||| | |||||||||  ||  | |||||| ||||  || |||||||||||||||||| ||||||||||    
T  42460201 tttaatctcatccactaactccccaacatccttctctttttgattgaaaatccgggcatttctttccttccaaatcaaccaaatagt 42460287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 36989102 - 36988928
Alignment:
Q  55 ttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgctttaatatcgtc 154  Q
    ||||||| ||||  |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| || ||||     
T  36989102 ttagacactctctaggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgtt 36989003  T
Q  155 cacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagt 229  Q
    ||| ||||||||||||| ||||||| | ||||| || ||||| || |||||||||||||||||| ||||||||||    
T  36989002 cactatttcctccacattcttccttagattattaaaaatcctcgcatttctttccttccaaatcaaccaaatagt 36988928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 32774127 - 32774309
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgc 142  Q
    |||||||||| ||||| || ||||  |||||||| |||||||||||||||||||| || |||||||| || ||||||||| |||||||||||||||  ||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
Q  143 tttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaa 225  Q
    ||| || || ||||| |  ||||| || |||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  32774227 tttgatctcatccactaaatcctcaacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcaaccaaa 32774309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 46594840 - 46594956
Alignment:
Q  20 gcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactc 119  Q
    |||||| ||||||||||||||| ||||||| || |||| |||||||   ||||| || |||||||| |||||||| || |||||||| || |  ||||||    
T  46594840 gcagatccaaaaagaaagccactttcatctcctatttaaacattctttaggatttcaagtccactcgtaaaagagaaaggaagctatgttaagtctactc 46594939  T
Q  120 aacatccaaacccaaga 136  Q
    || | ||||| ||||||    
T  46594940 aatacccaaaaccaaga 46594956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 17257111 - 17257069
Alignment:
Q  80 ccactcataaaagaggaaagaagctatcttcaacctactcaac 122  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||    
T  17257111 ccactcgtaaaagaggcaagaagcaatcttcaacctactcaac 17257069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 19586680 - 19586722
Alignment:
Q  189 aagatccttgcgtttctttccttccaaatcgaccaaatagttg 231  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||    
T  19586680 aagatccttgcatttctttccttccaaatcaaccaaatcgttg 19586722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 11272617 - 11272428
Alignment:
Q  41 cgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagt 140  Q
    |||||||||||| ||| | || ||||  ||| |||| || |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||      
T  11272617 cgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaacc 11272518  T
Q  141 gctttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagttg 231  Q
    ||||| || || | ||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||| ||| |||||| ||||||| ||||    
T  11272517 gctttgatttcattcacaatttcctccacttcctttctttgattattgaaaatccttgcatttcttt-ctttcaaatcaaccaaattgttg 11272428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 33858647 - 33858720
Alignment:
Q  36 agccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatctt 109  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| |||||| ||||    
T  33858647 agccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagctttctt 33858720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 1479471 - 1479628
Alignment:
Q  69 ggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctcca 168  Q
    |||||||| |||||||||||||||||||| || |||||||| || ||||||| | ||||| |||| ||||  ||||| || ||||| || |  || ||||    
T  1479471 ggattccaagtccactcataaaagaggaacgatgctatctttaatctactcagcgtccaatcccacgaaaccgctttgatctcgtcaactacctcttcca 1479570  T
Q  169 catccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaat 226  Q
    | ||||||  || |||  |||| |||||||| ||||||||||||||| || |||||||    
T  1479571 cctccttctctttgttggtgaaaatccttgcatttctttccttccaagtcaaccaaat 1479628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 13016924 - 13017036
Alignment:
Q  114 ctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttcc 213  Q
    ||||||||| |||||||||||||||   |||| || || ||||| | |||||| || ||||||  || ||| || || ||||| || ||||||||| |||    
T  13016924 ctactcaacgtccaaacccaagaaaccacttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatcc 13017023  T
Q  214 aaatcgaccaaat 226  Q
    |||||||||||||    
T  13017024 aaatcgaccaaat 13017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 8273909 - 8273738
Alignment:
Q  55 ttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgctttaatatcgtc 154  Q
    ||||||| ||||  ||||||||  ||||||||||||||||||||||||||||||| || ||||||  | |||||||||||||||  || ||||| || ||    
T  8273909 ttagacactctctaggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatc 8273810  T
Q  155 cacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaat 226  Q
    ||| |  |||||||| || ||| |||| || || || |||||||| ||||||||||||||||||||||||||    
T  8273809 cactaactcctccacttctttcatttgattgttaaaaatccttgcatttctttccttccaaatcgaccaaat 8273738  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 37269843 - 37270030
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgc 142  Q
    |||||||||| || ||||||||||  |||||||| |||||||||||||||||||| ||||||||||| |  |||||||||| ||||| |||||| |   |    
T  37269843 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataac 37269942  T
Q  143 tttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagttg 231  Q
    ||| || || |||||||| || ||||||||||||  ||| || || || ||||| || |||| |||||||||||||| |||||| ||||    
T  37269943 tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttc-ttccttccaaatcgtccaaattgttg 37270030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 231
Target Start/End: Complemental strand, 42941325 - 42941137
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgc 142  Q
    |||||||||| ||  |||||||||  |||||||| |||||||||||||||||||| ||||||||||| |  |||||||||| || || |||||| |   |    
T  42941325 ttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaac 42941226  T
Q  143 tttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagttg 231  Q
    ||| || || |||||||| || ||||||||||||  ||| || || || ||||| || ||| ||||||||||||||| |||||| ||||    
T  42941225 tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttttttccttccaaatcgtccaaattgttg 42941137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 9936481 - 9936295
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgc 142  Q
    |||||||||| ||||| || | ||  || ||||| |||||||||||||||||||| || |||||||| |  || ||||||||||| |||||||| |  ||    
T  9936481 ttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgctcaacatccacacccaagacaccgc 9936382  T
Q  143 tttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagt 229  Q
    || ||| || ||||| |  ||| | |||||||||  || || |||||| |||| ||| ||||||||| |||||||| ||||||||||    
T  9936381 ttcaatctcatccactaactccccaacatccttctctttgtgattgaaaatccgtgcatttctttccatccaaatcaaccaaatagt 9936295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 36404064 - 36404157
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaaga 136  Q
    |||||||||| |||| ||||||||  |||||||| |||||||| || |||||||| ||||||||||| |  |||||||||  ||||| ||||||    
T  36404064 ttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaaga 36404157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 1722 - 1855
Alignment:
Q  43 ttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagtgc 142  Q
    |||||||||| || ||||||||||  |||||||| |||||||||||||||||||| ||||||||||| |  |||||||||| ||||| |||||| |   |    
T  1722 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataac 1821  T
Q  143 tttaatatcgtccacaatttcctccacatccttc 176  Q
    ||| || || |||||||| || ||||||||||||    
T  1822 tttgatttcctccacaatctcatccacatccttc 1855  T

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Target: scaffold0495 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 9543 - 9492
Alignment:
Q  70 gattccatgtccactcataaaagaggaaagaagctatcttcaacctactcaa 121  Q
    |||||||  |||||||||||||||||||||||||||||||||  ||||||||    
T  9543 gattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaa 9492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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