View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2473_low_30 (Length: 239)

Name: NF2473_low_30
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2473_low_30
NF2473_low_30
[»] chr7 (11 HSPs)
chr7 (1-222)||(39563724-39563945)
chr7 (1-222)||(39339007-39339228)
chr7 (1-222)||(39366430-39366651)
chr7 (1-222)||(39547093-39547314)
chr7 (1-222)||(39537628-39537849)
chr7 (1-222)||(39353850-39354071)
chr7 (17-222)||(39588806-39589011)
chr7 (1-222)||(1084430-1084651)
chr7 (18-222)||(39574338-39574542)
chr7 (9-148)||(39621747-39621886)
chr7 (68-222)||(42132593-42132747)
[»] chr2 (4 HSPs)
chr2 (9-222)||(44210568-44210781)
chr2 (9-222)||(44233590-44233803)
chr2 (74-222)||(43456938-43457086)
chr2 (9-222)||(44222768-44222981)
[»] chr8 (1 HSPs)
chr8 (51-222)||(4501677-4501848)
[»] chr3 (4 HSPs)
chr3 (11-224)||(49773517-49773730)
chr3 (74-216)||(12717026-12717168)
chr3 (50-222)||(25522836-25523008)
chr3 (68-216)||(49669993-49670141)
[»] chr4 (5 HSPs)
chr4 (56-195)||(2896812-2896951)
chr4 (9-195)||(2887356-2887542)
chr4 (68-216)||(53668569-53668717)
chr4 (60-195)||(2877884-2878019)
chr4 (119-222)||(46452264-46452367)
[»] chr1 (3 HSPs)
chr1 (71-219)||(2160241-2160389)
chr1 (56-223)||(2148409-2148576)
chr1 (75-216)||(25986644-25986785)
[»] scaffold0210 (1 HSPs)
scaffold0210 (68-216)||(8751-8899)
[»] chr6 (1 HSPs)
chr6 (134-216)||(10901738-10901820)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39563945 - 39563724
Alignment:
Q  1 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39563945 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 39563846  T
Q  101 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39563845 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtactatccacc 39563746  T
Q  201 agcctagcattgatatatttga 222  Q
    ||||||||||||||||||||||    
T  39563745 agcctagcattgatatatttga 39563724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39339007 - 39339228
Alignment:
Q  1 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 100  Q
    ||||||||| ||||||||||  |||||||| ||||||||||||||| || ||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  39339007 agtaggactacctggtgttagcggtctctcaacggagcagcgcaaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggat 39339106  T
Q  101 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccacc 200  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  39339107 gagccaacttctgggctagatgcaagggctgcagctattgttatgagaacagttaggaacacagtagacactggaagaacagttgtttgtacaatccacc 39339206  T
Q  201 agcctagcattgatatatttga 222  Q
    ||||||||||||||||||||||    
T  39339207 agcctagcattgatatatttga 39339228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39366430 - 39366651
Alignment:
Q  1 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 100  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| || | ||  |||||||||| |||||||||||||||||||||||||||||||||    
T  39366430 agtaggactgcctggtgttagtggtctctcgacagagcagcgcaaaaggctaactgttgcagttgaattggtagctaatccttcaataatattcatggat 39366529  T
Q  101 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccacc 200  Q
    || |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||  |||| |||||||| |||||||||||||||||||    
T  39366530 gagccaacttctgggctagatgcgagggctgcagctatagtgatgagagcagttaggaacacagttgacaccggaagaactgttgtttgtaccatccacc 39366629  T
Q  201 agcctagcattgatatatttga 222  Q
    ||||||||||||||||||||||    
T  39366630 agcctagcattgatatatttga 39366651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39547314 - 39547093
Alignment:
Q  1 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 100  Q
    ||||||||| ||||||||||  |||||||| ||||||||||||||| || |||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  39547314 agtaggactacctggtgttagcggtctctcaacggagcagcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggat 39547215  T
Q  101 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccacc 200  Q
    || ||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  39547214 gagccaacttctggacttgatgcaagagctgcagctattgttatgagaacagttaggaacacagtagacaccggaagaacagttgtttgtaccatccacc 39547115  T
Q  201 agcctagcattgatatatttga 222  Q
    ||||||||||||||||||||||    
T  39547114 agcctagcattgatatatttga 39547093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39537849 - 39537628
Alignment:
Q  1 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 100  Q
    ||||||||| ||||||||||   ||||||| ||||||||||||||| || |||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  39537849 agtaggactacctggtgttagcagtctctcaacggagcagcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggat 39537750  T
Q  101 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccacc 200  Q
    || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  39537749 gagccaacttctggacttgatgcaagggctgcagctattgttatgagaacagttaggaacacagtagacactggaagaacagttgtttgtaccattcacc 39537650  T
Q  201 agcctagcattgatatatttga 222  Q
    | ||||||||||||||||||||    
T  39537649 aacctagcattgatatatttga 39537628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39353850 - 39354071
Alignment:
Q  1 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 100  Q
    ||||||||| |||||||||   |||||||| | ||||||||||||| || ||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  39353850 agtaggacttcctggtgtttgcggtctctcaatggagcagcgcaaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggat 39353949  T
Q  101 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccacc 200  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||| | || |||||||||||||||||||| |||||||    
T  39353950 gaaccaacttctgggctagatgcaagggctgcagcagttgtgatgagaacagttagaaacacagtagatacaggaagaacagttgtttgtacaatccacc 39354049  T
Q  201 agcctagcattgatatatttga 222  Q
    ||||||||||||||||||||||    
T  39354050 agcctagcattgatatatttga 39354071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 39589011 - 39588806
Alignment:
Q  17 gttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggc 116  Q
    |||| |||||| ||||||||||| |||||| |||||||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||    
T  39589011 gttagtggtctatcgacggagcaacgcaaaaggttgacagttgcagttgagttagtggctaatccttctataatattcatggatgagccaacttcggggc 39588912  T
Q  117 tagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcattgatat 216  Q
    ||||||||||||||||| ||||||| |||||| ||||||| |||| |||  |||| ||||||||| ||||||||||||| || ||||| |||||| ||||    
T  39588911 tagatgcaagggctgcatctattgttatgagagcagttagaaacatagtggacacaggaagaacaattgtttgtaccattcatcagcccagcattcatat 39588812  T
Q  217 atttga 222  Q
    ||||||    
T  39588811 atttga 39588806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1084651 - 1084430
Alignment:
Q  1 agtaggactgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggat 100  Q
    ||||||||| ||||||||||   ||||||| || ||| ||| |||| || |||| |||||||||||||||||  |||||||||| |||||||| ||||||    
T  1084651 agtaggactacctggtgttagcagtctctcaacagagtagcacaaaaggctgactattgcagttgagttggtttctaatccttctataatatttatggat 1084552  T
Q  101 gaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccacc 200  Q
    || |||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||| |    
T  1084551 gagccaacttctgggctagatgcaatggcagcagcgattgttatgagaacagttaggagcacagtagacactggaagaactgttgtttgcaccatccatc 1084452  T
Q  201 agcctagcattgatatatttga 222  Q
    | || || ||||||||||||||    
T  1084451 aaccaagtattgatatatttga 1084430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 39574542 - 39574338
Alignment:
Q  18 ttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggct 117  Q
    |||| ||||| || || |||||||| ||| | ||||| |||||||||||  ||||   ||||||||| || |||||||||||||| |||||||||||| |    
T  39574542 ttaacggtctatcaactgagcagcgtaaaagattgactattgcagttgaactggtgtgtaatccttctatcatattcatggatgagccaacttctgggtt 39574443  T
Q  118 agatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcattgatata 217  Q
    ||||||||| |||||||||||||| |||||| |||||||||||| |||  |||||||||||||| |||| |||||||| |||||||| |||||||||||     
T  39574442 agatgcaagagctgcagctattgttatgagagcagttaggaacatagtggacactggaagaacaattgtgtgtaccattcaccagcccagcattgatatc 39574343  T
Q  218 tttga 222  Q
    |||||    
T  39574342 tttga 39574338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 39621886 - 39621747
Alignment:
Q  9 tgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaac 108  Q
    ||||||||| || ||||||||| ||    ||||| ||| ||||||| ||||| || ||||| || || |||||||||||||| ||||||||||| |||||    
T  39621886 tgcctggtgctactggtctctctacactacagcgaaaaaggttgactattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaac 39621787  T
Q  109 ttctgggctagatgcaagggctgcagctattgtgatgaga 148  Q
    ||| ||||||||||||||  |||  |||||||| ||||||    
T  39621786 ttcagggctagatgcaagatctgtcgctattgttatgaga 39621747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 42132747 - 42132593
Alignment:
Q  68 ttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaa 167  Q
    ||||| ||||| |||||||| || ||||||||||||||||| || || || ||||| || || || || ||||||||| |||| || || |||||||||     
T  42132747 ttggttgctaacccttcaatcatcttcatggatgaaccaacatcaggccttgatgctagagccgctgccattgtgatgcgaactgtgagaaacacagtag 42132648  T
Q  168 acactggaagaacagttgtttgtaccatccaccagcctagcattgatatatttga 222  Q
    |||| || ||||| ||||| || || || ||||| || ||||||||||| |||||    
T  42132647 acacagggagaactgttgtgtgcacaattcaccaaccaagcattgatatttttga 42132593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 44210781 - 44210568
Alignment:
Q  9 tgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaac 108  Q
    |||||||||||| ||||||||| ||||| || || ||| ||||||| |||||||||||  | || |||||||| || ||||| |||||||||||||||||    
T  44210781 tgcctggtgttagtggtctctcaacggaacaacgtaaaaggttgactattgcagttgaactagtggctaatccgtccataattttcatggatgaaccaac 44210682  T
Q  109 ttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagc 208  Q
    ||||||  ||||||| || ||||| || ||||| |||||||| || |||||||||||  |||| |||||||||||||| ||||||||||| || ||||||    
T  44210681 ttctggtttagatgctagagctgctgcaattgttatgagaactgtaaggaacacagtggacacaggaagaacagttgtgtgtaccatccatcaacctagc 44210582  T
Q  209 attgatatatttga 222  Q
    ||||| ||||||||    
T  44210581 attgacatatttga 44210568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 44233803 - 44233590
Alignment:
Q  9 tgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaac 108  Q
    |||||||||| | ||||||||| || || ||||||||  |  |||| |||||||||||  | || |||||||| || ||||| || |||||||| || ||    
T  44233803 tgcctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagttgaacttgtggctaatccatctataatttttatggatgagcctac 44233704  T
Q  109 ttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagc 208  Q
    ||||||  ||||||| || ||||| || ||||| |||||||| || |||||||||||  |||| |||||||||||||| ||||||||||| |||||||||    
T  44233703 ttctggtttagatgctagagctgctgcaattgttatgagaactgtaaggaacacagtggacacaggaagaacagttgtgtgtaccatccatcagcctagc 44233604  T
Q  209 attgatatatttga 222  Q
    ||||| ||||||||    
T  44233603 attgacatatttga 44233590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 43457086 - 43456938
Alignment:
Q  74 gctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactg 173  Q
    |||||||||||||| || |||||||||||||||||||| || || |||||||| |||||||| ||||| ||||| ||||| || ||||| ||  ||||||    
T  43457086 gctaatccttcaatcattttcatggatgaaccaacttcaggtcttgatgcaagagctgcagcaattgttatgaggacagtgagaaacactgttgacactg 43456987  T
Q  174 gaagaacagttgtttgtaccatccaccagcctagcattgatatatttga 222  Q
    ||||||||||||| || || || ||||||||||| || ||||| |||||    
T  43456986 gaagaacagttgtctgcacaattcaccagcctagtatcgatatctttga 43456938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 44222981 - 44222768
Alignment:
Q  9 tgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaac 108  Q
    |||||||||| | ||||||||| || || ||||||||  |  |||| |||||||| ||  | || |||||||| || ||||| ||||||||||| || ||    
T  44222981 tgcctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctac 44222882  T
Q  109 ttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagc 208  Q
    ||||||  ||||||| || || || || ||||| ||| |||| || |||||||||||  |||| |||||||||||||| ||||||||||| || ||||||    
T  44222881 ttctggtttagatgctagagcggctgcaattgttatgcgaactgtaaggaacacagtggacacgggaagaacagttgtgtgtaccatccatcaacctagc 44222782  T
Q  209 attgatatatttga 222  Q
    ||||| ||||||||    
T  44222781 attgacatatttga 44222768  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 4501677 - 4501848
Alignment:
Q  51 tgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaac 150  Q
    |||||||||| || ||| | || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || |||||||| ||||| ||    
T  4501677 tgacaattgcggtcgagcttgttgctaatccttcaatcatattcatggatgagccaacttctggtctagatgcaagagcagctgctattgttatgaggac 4501776  T
Q  151 agttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcattgatatatttga 222  Q
     || || ||||| ||  | ||||||||||||||||| || || || || || |||||||||||||| |||||    
T  4501777 tgtaagaaacactgttgatactggaagaacagttgtgtgcacaattcatcaacctagcattgatatctttga 4501848  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 49773517 - 49773730
Alignment:
Q  11 cctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaactt 110  Q
    |||||||| |||||||| || || || ||||||||  |||| || |||||||||||  | || || ||||| || || ||||||||||||||||| || |    
T  49773517 cctggtgtgaatggtctgtccacagaacagcgcaagaggttaacgattgcagttgaacttgttgccaatccatctattatattcatggatgaacctacct 49773616  T
Q  111 ctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcat 210  Q
    |||| || |||||||| ||||| ||||| || ||||||||||| ||||| |||||  |||| || ||||| ||||| || || || || |||||||| ||    
T  49773617 ctggccttgatgcaagagctgctgctatagtaatgagaacagtgaggaatacagtggacacagggagaactgttgtctgcacaattcatcagcctagtat 49773716  T
Q  211 tgatatatttgatg 224  Q
    ||||||||||||||    
T  49773717 tgatatatttgatg 49773730  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 12717168 - 12717026
Alignment:
Q  74 gctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactg 173  Q
    ||||| |||||||| || ||||||||||||||||| || || || ||||| || || || |||||||||||| |||| || || ||||||||| |||| |    
T  12717168 gctaacccttcaatcatcttcatggatgaaccaacatcaggccttgatgctagagccgctgctattgtgatgtgaactgtgagaaacacagtagacacag 12717069  T
Q  174 gaagaacagttgtttgtaccatccaccagcctagcattgatat 216  Q
    | ||||| ||||| || || || ||||| || |||||||||||    
T  12717068 ggagaactgttgtgtgcacaattcaccaaccaagcattgatat 12717026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 25523008 - 25522836
Alignment:
Q  50 ttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaa 149  Q
    |||||||| ||||| ||  | ||||| || ||||| ||||| |||||||||||||| || || || || |||||| | || || || ||||| |||||||    
T  25523008 ttgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaa 25522909  T
Q  150 cagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcattgatatatttga 222  Q
    | ||| | || || ||  | ||||||||||| || ||||||||||| || ||||| || ||||||||||||||    
T  25522908 ctgttcgcaatactgttgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttga 25522836  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 49669993 - 49670141
Alignment:
Q  68 ttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaa 167  Q
    ||||| ||||| ||||||||||| ||||| ||||||||||| || || || ||||| || ||  | |||||||||||| |||| |  || |||||||||     
T  49669993 ttggttgctaacccttcaataatcttcatagatgaaccaacatcaggccttgatgctagagccactgctattgtgatgcgaactgcgagaaacacagtag 49670092  T
Q  168 acactggaagaacagttgtttgtaccatccaccagcctagcattgatat 216  Q
    ||||  | ||||  ||||| || || || ||||| || |||||||||||    
T  49670093 acacatggagaattgttgtgtgcacaattcaccaaccaagcattgatat 49670141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 195
Target Start/End: Complemental strand, 2896951 - 2896812
Alignment:
Q  56 attgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagtta 155  Q
    ||||||||||| || || || ||||| || ||||| ||||||||||| || || |||||  ||||||| || ||||| || ||||| ||| |||||||||    
T  2896951 attgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggattagatgctagagctgctgcaattgttatgcgaacagtta 2896852  T
Q  156 ggaacacagtaaacactggaagaacagttgtttgtaccat 195  Q
    ||||||| ||  |||| ||||||||||||||||| |||||    
T  2896851 ggaacacggttgacacaggaagaacagttgtttgcaccat 2896812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 2887356 - 2887542
Alignment:
Q  9 tgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaac 108  Q
    |||||||||| |||||||| || || || || |||||  || | || ||||||||||| || || || ||||| || ||||| ||||||||||| || ||    
T  2887356 tgcctggtgtgaatggtctttcaaccgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctac 2887455  T
Q  109 ttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccat 195  Q
     |||||  ||||||| || ||||| || ||||| ||| |||| ||||||||||| ||  |||| ||||||||||||||||| |||||    
T  2887456 atctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccat 2887542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 53668717 - 53668569
Alignment:
Q  68 ttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaa 167  Q
    ||||| |||||||||||||| || ||||||||||||||||| |  || || ||||| || || || |||||||||||| |||| || || |||||||||     
T  53668717 ttggttgctaatccttcaatcatcttcatggatgaaccaacattaggccttgatgctagagccgctgctattgtgatgcgaactgtgagaaacacagtag 53668618  T
Q  168 acactggaagaacagttgtttgtaccatccaccagcctagcattgatat 216  Q
    ||||  | ||||| ||||| || || || ||||| || |||||||||||    
T  53668617 acacatggagaacggttgtgtgcacaattcaccaaccaagcattgatat 53668569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 2877884 - 2878019
Alignment:
Q  60 cagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaa 159  Q
    ||||||| || || || ||||| || ||||| |||||||| || || || |||||  ||||||| || ||||| || ||||| ||| |||| ||||||||    
T  2877884 cagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaa 2877983  T
Q  160 cacagtaaacactggaagaacagttgtttgtaccat 195  Q
    ||| ||  |||| |||||||||||||||||||||||    
T  2877984 cacggttgacacaggaagaacagttgtttgtaccat 2878019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 46452264 - 46452367
Alignment:
Q  119 gatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcattgatatat 218  Q
    ||||| ||||||||||| |||||||||||||| || ||||| |  ||||| |||||  ||||  |||| || |||||||| ||||||||||| || ||||    
T  46452264 gatgctagggctgcagccattgtgatgagaactgtgaggaatattgtaaatactgggcgaacgattgtctgcaccatccatcagcctagcatagacatat 46452363  T
Q  219 ttga 222  Q
    ||||    
T  46452364 ttga 46452367  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 2160389 - 2160241
Alignment:
Q  71 gtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaaca 170  Q
    ||||| ||||| || ||||||||||||||||| ||||| ||||| || ||||| || || || || ||||| ||||||||||| |||||||||||  |||    
T  2160389 gtagcgaatccatcgataatattcatggatgagccaacctctggccttgatgctagagcagctgcaattgtaatgagaacagtgaggaacacagttgaca 2160290  T
Q  171 ctggaagaacagttgtttgtaccatccaccagcctagcattgatatatt 219  Q
    | ||| | || |||||||| || ||||| ||||| || ||||| |||||    
T  2160289 caggacgtactgttgtttgcacaatccatcagccaagtattgacatatt 2160241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 2148576 - 2148409
Alignment:
Q  56 attgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagtta 155  Q
    |||||||||||  | ||||| ||||| || ||||||||||||||||||||||| ||||| || |||||  | || || || ||||| ||| ||||||| |    
T  2148576 attgcagttgaacttgtagcgaatccatcgataatattcatggatgaaccaacctctggcctggatgctcgagcagctgcgattgtaatgcgaacagtaa 2148477  T
Q  156 ggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcattgatatatttgat 223  Q
    ||||||| ||  |||| ||| | || || || || || ||||| ||||| || ||||| |||||||||    
T  2148476 ggaacactgtggacacaggacgtaccgtggtgtgcacgatccatcagccgagtattgacatatttgat 2148409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 25986785 - 25986644
Alignment:
Q  75 ctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaaacactgg 174  Q
    |||| |||||||| || ||||||||||||||||| || || || ||||| || || || ||||||| |||| |||| || || ||||| ||| |||| ||    
T  25986785 ctaacccttcaatcatcttcatggatgaaccaacatcaggccttgatgctagagccgctgctattgagatgcgaactgtgagaaacacggtagacacagg 25986686  T
Q  175 aagaacagttgtttgtaccatccaccagcctagcattgatat 216  Q
     ||||| ||||| || || || ||||| || |||||||||||    
T  25986685 gagaactgttgtgtgcacaattcaccaaccaagcattgatat 25986644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 8751 - 8899
Alignment:
Q  68 ttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaacagttaggaacacagtaa 167  Q
    ||||| ||||| |||||||| |||||||||||||||||| | || || || ||||| || ||||| |||||||||||| |||| || || |||||||||     
T  8751 ttggttgctaacccttcaatcatattcatggatgaaccatcatcaggccttgatgctagagctgctgctattgtgatgcgaactgtgagaaacacagtag 8850  T
Q  168 acactggaagaacagttgtttgtaccatccaccagcctagcattgatat 216  Q
    |||| || ||||  ||||| || || || ||||| || || ||||||||    
T  8851 acacagggagaaatgttgtgtgcacaattcaccaaccaagtattgatat 8899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 10901820 - 10901738
Alignment:
Q  134 gctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtaccatccaccagcctagcattgatat 216  Q
    |||||||||||| |||| || || ||||||||| |||| |||||||| ||||| || || || ||||| || |||||||||||    
T  10901820 gctattgtgatgtgaactgtgagaaacacagtagacacaggaagaactgttgtgtgcacaattcaccaaccaagcattgatat 10901738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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