View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_low_31 (Length: 238)
Name: NF2473_low_31
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 44727625 - 44727746
Alignment:
| Q |
12 |
agcataggctagatatccaaaacgttttcctcgtgctaaatgattacactatatgttctttaaaattaaaaatcaacaataaaaagaaaaccatctttat |
111 |
Q |
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| T |
44727625 |
agcatagcctggatatccaaaacgttttcctcgtgctaaatgattacactatatgttctttaaaattaaaaatcaacaat-aaaagaaaaccatctttat |
44727723 |
T |
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| Q |
112 |
gaatctatatatataactcttca |
134 |
Q |
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|||| |||||||||||||||||| |
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| T |
44727724 |
gaatttatatatataactcttca |
44727746 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 44727976 - 44728065
Alignment:
| Q |
133 |
cattgctgtatcccaaatgaagagccctgcagtacctgggtcggatggtctccctgccattttcggattaggattctcttccgtgataat |
222 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44727976 |
cattgctgtatcccaaatgaagagccaggcagtacctgggtcggatggtctccctgccattttcggattaggattctcttccgtgataat |
44728065 |
T |
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