View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_low_5 (Length: 634)
Name: NF2473_low_5
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 5189113 - 5188791
Alignment:
| Q |
16 |
accatgctgggtcaaaagttgtcaaacataagtcaaaatatggtttttcaacctttctcatctgcatggccatgcaatattgtcacagctgaataaataa |
115 |
Q |
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| T |
5189113 |
accatgctgggtcaaaagttgtcaaacataagtcaaaatatggtttttcaacctttctcatctgcatggccatgcaatattgtcacagctgaataaataa |
5189014 |
T |
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| Q |
116 |
actttgataatgttcttgattaacaaacgttaattaatttataaagggtctacgttaaatataacttgttttaatttgtatgtgtaaattattaaaggta |
215 |
Q |
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| T |
5189013 |
actttgatgatgttcttgattaacaaacgttaattaatttataaagggtctacgttaaatataacttgttttaatttgtatgtgtaaattattaaaggta |
5188914 |
T |
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| Q |
216 |
gataaattaagattaggtaaagtgggggagggtgcttttttggggaaaaagagtaaggctttggaaaatattgatgccatatggtggttgtcattgtt-t |
314 |
Q |
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| T |
5188913 |
gataaattaagattaggtaaagtgggggagggtgcttttttggggaaaaagagtaaggctttggaaaatattgatgccatatggtggttgtcattgtttt |
5188814 |
T |
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| Q |
315 |
tttgaaactatcgattatagtac |
337 |
Q |
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| T |
5188813 |
tttgaaactatcgattatagtac |
5188791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 393 - 623
Target Start/End: Complemental strand, 5188735 - 5188506
Alignment:
| Q |
393 |
cttgaagtgtattaatttttcagtaattccatagtgtggaatttgtgaattttttgtggttagtgatgttctaatatatatattgattcgtttcctctag |
492 |
Q |
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| T |
5188735 |
cttgaagtgtattagtttttcagtaattccatagtgtggaatttgtgaattttttgtggttagtgatgttctaatatatatattgattcgtttcctctag |
5188636 |
T |
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| Q |
493 |
ttaagatttcgttattttattatggttttcattcatcatgcaactcaacgacgcaagggtttgatgcagattccaaatcccttcctatacagtatatatg |
592 |
Q |
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| T |
5188635 |
ttaagatttcgttattttattatggttttcattcatcatgcaacacaacgacgcaagggtttgatgcagattccaaatccctt-ctatacagtatatatg |
5188537 |
T |
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| Q |
593 |
aattattttattcatcaaaatgacagctacg |
623 |
Q |
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| T |
5188536 |
aattattttattcatcaaaatgacagctacg |
5188506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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