View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_low_6 (Length: 608)
Name: NF2473_low_6
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 52 - 595
Target Start/End: Original strand, 9491051 - 9491594
Alignment:
| Q |
52 |
gaaatattttactattagtgaaaagaaaacttgtaaatttgatttttgtgagaatgacacttgcattgcaattttgattatgatcatgtgacatgagaat |
151 |
Q |
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| T |
9491051 |
gaaatattttcctattagtgaaaagaaaactagtaactttgatattggtgattatgacacttacattggaattttcattatgttcatgtgacatgagaat |
9491150 |
T |
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| Q |
152 |
atgctgtgatatagacacaaggttgagacatgagaagaggatcctattggtgttgtgttgtttaacatcattgacaaaaattgatgccattcctatgcga |
251 |
Q |
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| T |
9491151 |
atgttgtgatatagacacaaggttgagacatgagaagaggatcctattggtgttgtgttgtttaacatcattgacaaaaattgatgccattactatggga |
9491250 |
T |
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| Q |
252 |
atatgctgcactcaaggattcttttgaactttgattttgatttttgattggtctataaacttcttaatttcaaaattttataacttgtacattaaattca |
351 |
Q |
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| T |
9491251 |
atatgctgcactcaaggattcttttgaactttgattttgatttttgattggtctataaacttcttaatttcaaaattttataacttatacattaaattca |
9491350 |
T |
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| Q |
352 |
tacgtaagcatgcatgcttggttgcttctttgttattttaattttgatcatgtattatataagtgtaccaaatagtgttgactttgattaaattttgttt |
451 |
Q |
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| T |
9491351 |
tacgtaagcatgcatgtttggttgcttctttgttattttaattttgatcatgtattatataagtgtaccaaatagtgttgactttgattaaattttgttt |
9491450 |
T |
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| Q |
452 |
atgcgattagtaaattgtacttgaaattcaatggttggattatttatcttttgtgagagatttaactgaaagtcaagctaagattgaagtgggattctaa |
551 |
Q |
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| T |
9491451 |
atgcgattagtaaattgtacttgaaattcaatggttggattctttattttttgtgaaagatttaactgaacgtcaagctacaattgaagtgggattctta |
9491550 |
T |
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| Q |
552 |
tcattcatttaatactaagttgacataacaaatatcacgaattt |
595 |
Q |
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| T |
9491551 |
tcattcatttaatactaagttgacataacaaatatcacgaattt |
9491594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 9490994 - 9491034
Alignment:
| Q |
15 |
tatgtaactaagctttacttatattttgatgtatgtggaaa |
55 |
Q |
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| T |
9490994 |
tatgaaactaagctttacttatattttgatgtatgtggaaa |
9491034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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