View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2474_low_1 (Length: 431)
Name: NF2474_low_1
Description: NF2474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2474_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 10553995 - 10554390
Alignment:
| Q |
17 |
tgggggaaaaagtgaatgaataagggttagcttgagatttctatatataggagataagagaaagagatgattagggttctcttctttatggatctttgac |
116 |
Q |
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| T |
10553995 |
tgggggaaaaagtgaatgaataagggttagcttgagatttctatatataggagataaga------gatgattagggttctcttctttatggatctttgac |
10554088 |
T |
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| Q |
117 |
tcgggggttactcccatgtcgctactattgatgtgctttaatgtctttataaatattctctatcgtgatgtgatccttgttagtctacaaggatgttggg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10554089 |
tcgggggttactcccatgtcgctactattgatgtgctttaatgtctttatatatattctctatcgtgatgtgatccttgttagtctacaaggatgttggg |
10554188 |
T |
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| Q |
217 |
tgtagtctcttgccatggct-----gtatgaatgtggagctggttcatcttgtatacctgaggagcaaatatcggtttggatatggggtttccataactg |
311 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10554189 |
tgtagtctcttgccatggctctagagtatgaatgtggagctggatcatcttgtatacctgaggaggaaatatcggtttggatatggggtttccataactg |
10554288 |
T |
|
| Q |
312 |
agatactnnnnnnntcaacatgttgagctgcaatccttgaagcacaccaatggaaactagctcaaatccgagaaattatgatgacggtaaaacaattgac |
411 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
10554289 |
agatactaaaaaaatcaacatgttgagctgcaatccttgaagca----aatggaaactagctcaaatccgagaaatgatgatgacggtaaaaaaattgac |
10554384 |
T |
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