View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2474_low_3 (Length: 342)
Name: NF2474_low_3
Description: NF2474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2474_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 42463793 - 42463663
Alignment:
| Q |
19 |
agctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacactctgaatg |
118 |
Q |
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| T |
42463793 |
agctccaagaggaacagctggttttgctctcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacactctgaatg |
42463694 |
T |
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| Q |
119 |
aataatcacattttcattacacttcagtcac |
149 |
Q |
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| T |
42463693 |
aataatcacattttcattacacttcagtcac |
42463663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 42463615 - 42463482
Alignment:
| Q |
197 |
tttcacatatttcaattcaatctacaagagaaaccaaaaattattttcttctgatagcaattacaatgtagctatgaagcacggatactggacccaacac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
42463615 |
tttcacatatttcaattcaatctacaagagaaaccaaaaattattttcttctgataacaattacattatagctatgaagcacggatactggacacaacac |
42463516 |
T |
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| Q |
297 |
gaacactaacacccccgacatgaacactaacatat |
331 |
Q |
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| T |
42463515 |
gaacactaaca-caccgacacgaacactaacatat |
42463482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 37077857 - 37077761
Alignment:
| Q |
20 |
gctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacactctgaa |
116 |
Q |
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| T |
37077857 |
gctccaagaggaacagctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccccctccaagtataataccaagcacactctgaa |
37077761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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