View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2475_high_1_N (Length: 534)

Name: NF2475_high_1_N
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2475_high_1_N
NF2475_high_1_N
[»] chr6 (2 HSPs)
chr6 (192-520)||(3450324-3450656)
chr6 (72-205)||(3450176-3450309)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 192 - 520
Target Start/End: Original strand, 3450324 - 3450656
Alignment:
Q  192 aaagtttgaatgttgacatttgcaagttacgttgggctgcttgaggttgttaagttgttttatatt---atggtctgtatgatttgggaacatgttttct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||| ||||||||    
T  3450324 aaagtttgaatgttgacatttgcaagttacgttgggctgcttgaggttgttaagttgttttatattattatggtctgtttgatttgggaacgtgttttct 3450423  T
Q  289 gatttcttttcttgatgccaacaataattataaaaatcccatcttttgttgtttacttttatttttcaatgatttgcattagaaaatggtgaaaatcatt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3450424 gatttcttttcttgatgccaacaataattataaaaatcccatcttttgttgtttacttttatttttcaatgatttgcattagaaaatggtgaaaatcatt 3450523  T
Q  389 aaaagaaacctgtttttagtgcctattctgttttgattgttgttgtctatgacatacttgcattagtttg-nnnnnnnccttcatgttgtagcacatcat 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||        ||||||||||||||||||||||    
T  3450524 aaaagaaacctgtttttagtgcctattctgttttgattgttgttgtctatgacatacttgcttaagtttgttttttttccttcatgttgtagcacatcat 3450623  T
Q  488 attgaaacattctctggatgctatttagtcctt 520  Q
    |||||||||||||||||||||||||| ||||||    
T  3450624 attgaaacattctctggatgctatttggtcctt 3450656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 72 - 205
Target Start/End: Original strand, 3450176 - 3450309
Alignment:
Q  72 ctgttgcgacaatttggtcctaaagattttaaagacgttaatattgaggttgcatactgcaatttcaaaaccatgatttatgaatcgcaccggattgttg 171  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  3450176 ctgttgcgataatttggtcctaaagattttaaagacgttaatattgaggttgcatactgcaatttcaaaaccatgatttatggatcgcaccggattattg 3450275  T
Q  172 cttgttcatgcacatgttataaagtttgaatgtt 205  Q
    |||| |||||||||||||||||||||||||||||    
T  3450276 cttgctcatgcacatgttataaagtttgaatgtt 3450309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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