View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2475_low_10 (Length: 381)

Name: NF2475_low_10
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2475_low_10
NF2475_low_10
[»] chr1 (23 HSPs)
chr1 (13-353)||(48049809-48050149)
chr1 (71-235)||(48042138-48042303)
chr1 (142-245)||(48055356-48055461)
chr1 (73-146)||(29812820-29812893)
chr1 (73-146)||(48040176-48040249)
chr1 (78-146)||(48049410-48049478)
chr1 (78-146)||(48054682-48054750)
chr1 (72-146)||(5126507-5126581)
chr1 (72-146)||(48033106-48033180)
chr1 (72-170)||(48036700-48036798)
chr1 (77-146)||(48034714-48034783)
chr1 (73-146)||(48035761-48035834)
chr1 (73-146)||(48050612-48050685)
chr1 (73-146)||(48053130-48053203)
chr1 (73-146)||(48055946-48056019)
chr1 (78-146)||(39972786-39972854)
chr1 (78-146)||(48041327-48041395)
chr1 (71-146)||(22908327-22908402)
chr1 (73-146)||(48042838-48042911)
chr1 (73-146)||(48048645-48048719)
chr1 (91-146)||(29813662-29813717)
chr1 (80-139)||(48054322-48054381)
chr1 (292-353)||(48041737-48041797)
[»] chr4 (3 HSPs)
chr4 (73-146)||(49152530-49152603)
chr4 (73-151)||(38393558-38393636)
chr4 (87-144)||(26929298-26929355)
[»] chr2 (7 HSPs)
chr2 (71-151)||(6801047-6801127)
chr2 (71-146)||(7181567-7181642)
chr2 (77-146)||(13326995-13327064)
chr2 (73-146)||(35926120-35926193)
chr2 (78-146)||(6796500-6796568)
chr2 (78-146)||(39990583-39990651)
chr2 (78-142)||(35920134-35920198)
[»] chr3 (6 HSPs)
chr3 (75-146)||(38930468-38930539)
chr3 (72-146)||(34974806-34974880)
chr3 (77-146)||(47565676-47565745)
chr3 (78-151)||(53107637-53107710)
chr3 (77-146)||(53682985-53683054)
chr3 (78-146)||(31125756-31125824)
[»] chr7 (4 HSPs)
chr7 (77-146)||(23780472-23780541)
chr7 (78-151)||(43920605-43920678)
chr7 (72-151)||(40706104-40706183)
chr7 (87-144)||(46064797-46064854)
[»] chr6 (6 HSPs)
chr6 (78-146)||(992442-992510)
chr6 (78-146)||(10754597-10754665)
chr6 (78-146)||(10750280-10750348)
chr6 (76-151)||(18613086-18613161)
chr6 (95-146)||(32678635-32678686)
chr6 (78-146)||(10748684-10748752)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 48050149 - 48049809
Alignment:
Q  13 aatattgaatgaaaattggttttgggcagttttcaaacactgagaatactaaattaacaaaaaatggggcattccgagaatcgaactcggaacctctcac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48050149 aatattgaatgaaaattggttttgggcagttttcaaacactgagaatactaaattaacaaaaaatggggcattccgagaatcgaactcggaacctctcac 48050050  T
Q  113 atccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggttaggtgag--atatgtcttcttgtttactattgaaaatgttaat 210  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  48050049 acccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggttaggtgagatatatgtcttcttgtttactattgaaaatgttaat 48049950  T
Q  211 gcataccacatggtctgcagttgtattgtaatattagttgtgcgcagaggataacttggtttatnnnnnnnnnngtattagagtctacttacttatgtac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  48049949 gcataccacatggtctgcagttgtattgtaatattagttgtgcgcagaggataacttggtttat--aaaaaaaagtattagagtctacttacttatgtac 48049852  T
Q  311 cagtcaggggtaaacttgggattttatcattaaagataaagtt 353  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  48049851 cagtcaggggttaacttgggattttatcattaaagataaagtt 48049809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 71 - 235
Target Start/End: Complemental strand, 48042303 - 48042138
Alignment:
Q  71 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggtta 170  Q
    |||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  48042303 aaaagatggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggtta 48042204  T
Q  171 ggtgag--atatgtcttcttgtttactattgaaaatgttaatgcataccacatggtctgcagttgta 235  Q
    ||||||  ||||| ||||||| |||||||| ||| |||| |||||| ||||||||||||||||||||    
T  48042203 ggtgagatatatgacttcttg-ttactattaaaattgtttatgcatgccacatggtctgcagttgta 48042138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 48055461 - 48055356
Alignment:
Q  142 aaatggccatattgaagtaagcaaggttaggtgagat--atgtcttcttgtttactattgaaaatgttaatgcataccacatggtctgcagttgtattgt 239  Q
    ||||| |||||||||||||||||||||||||||||||  ||||||||||||||| || ||||| |||| ||| |||||||||||||||||||||||||||    
T  48055461 aaatgcccatattgaagtaagcaaggttaggtgagatctatgtcttcttgtttagtaatgaaattgttcatgaataccacatggtctgcagttgtattgt 48055362  T
Q  240 aatatt 245  Q
    ||||||    
T  48055361 aatatt 48055356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 29812820 - 29812893
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  29812820 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 29812893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48040249 - 48040176
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  48040249 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48040176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 48049478 - 48049410
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48049410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 48054750 - 48054682
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatg 48054682  T

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Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 5126581 - 5126507
Alignment:
Q  72 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  5126581 aaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 5126507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 48033180 - 48033106
Alignment:
Q  72 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48033180 aaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48033106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 48036798 - 48036700
Alignment:
Q  72 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggtta 170  Q
    ||||| ||||||||| ||||||| ||||| | ||||||  || |||||||||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  48036798 aaaaaaggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaatacccatcttgaagtaagaaaggtta 48036700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 48034783 - 48034714
Alignment:
Q  77 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48034783 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48034714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48035834 - 48035761
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48035834 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48035761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48050685 - 48050612
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48050685 aaaagggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48050612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48053203 - 48053130
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| |||||||||||||||| |||||||| ||||||| || ||||||||||||| ||||||||||||||||||    
T  48053203 aaaaaggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatg 48053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48056019 - 48055946
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48056019 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48055946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 39972786 - 39972854
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39972854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 48041395 - 48041327
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48041395 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48041327  T

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Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 22908402 - 22908327
Alignment:
Q  71 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||| |||||||||||||||| |||||||  ||||||| || || |||||||||||||||||||||||||||||    
T  22908402 aaaaaaaggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatg 22908327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48042911 - 48042838
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| ||||||||| ||||||||||||| |  |||||| || ||||||||||||||||||||||||||||||||    
T  48042911 aaaaaggggcattcagagaatcgaactccgggcctctcgcacccaaagcgagaatcataccactagaccaaatg 48042838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48048719 - 48048645
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccacta-gaccaaatg 146  Q
    |||| ||||||||||||||||| |||| || ||||||| || ||||||||||||| ||||||||| |||||||||    
T  48048719 aaaagggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatg 48048645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 29813662 - 29813717
Alignment:
Q  91 aatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||| | ||||||| || ||||||||||||||| ||||||||||||||||    
T  29813662 aatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatg 29813717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 48054381 - 48054322
Alignment:
Q  80 ggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactaga 139  Q
    ||||||| ||||||||||||| | ||||||| || ||||||||||||||||  |||||||    
T  48054381 ggcattctgagaatcgaactcaggacctctcgcacccaaagcgagaatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 48041797 - 48041737
Alignment:
Q  292 agtctacttacttatgtaccagtcaggggtaaacttgggattttatcattaaagataaagtt 353  Q
    ||||||||||||| | ||||| |||||||| ||||| |||||||||| || |||||||||||    
T  48041797 agtctacttacttttttaccattcaggggttaacttaggattttatcgtt-aagataaagtt 48041737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 49152530 - 49152603
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  49152530 aaaatggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 49152603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 38393558 - 38393636
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 151  Q
    |||| |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  38393558 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 38393636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  87 cgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaa 144  Q
    ||||||||||||||   ||||||| || || |||||||||||||||||||||||||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 6801047 - 6801127
Alignment:
Q  71 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 151  Q
    |||||| |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  6801047 aaaaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 6801127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 7181642 - 7181567
Alignment:
Q  71 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||| |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  7181642 aaaaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 7181567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 13326995 - 13327064
Alignment:
Q  77 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  13326995 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 13327064  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 35926120 - 35926193
Alignment:
Q  73 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||| |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  35926120 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 35926193  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 6796568 - 6796500
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  6796568 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 6796500  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 39990651 - 39990583
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39990583  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 35920134 - 35920198
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagacca 142  Q
    |||||||||||||||| ||||| || ||||||| || || |||| ||||||||||||||||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagacca 35920198  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 38930468 - 38930539
Alignment:
Q  75 aatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  38930468 aatggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38930539  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 34974880 - 34974806
Alignment:
Q  72 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  34974880 aaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 34974806  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 47565676 - 47565745
Alignment:
Q  77 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  47565676 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 47565745  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 53107710 - 53107637
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 151  Q
    |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 53107637  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 53683054 - 53682985
Alignment:
Q  77 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  53683054 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 53682985  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 31125824 - 31125756
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 31125756  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 23780541 - 23780472
Alignment:
Q  77 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  23780541 tggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 23780472  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 43920678 - 43920605
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 151  Q
    |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 43920605  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 40706183 - 40706104
Alignment:
Q  72 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 151  Q
    |||||||||||||||||||||| |||||||| ||||||| || |  ||||||||||||||| ||||||||||||| ||||    
T  40706183 aaaaatggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgcccat 40706104  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  87 cgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaa 144  Q
    ||||||||||||||   ||||||| || || |||||||||||||||||||||||||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 992442 - 992510
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  992442 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 992510  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 10754597 - 10754665
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  10754597 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 10754665  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 10750280 - 10750348
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||||| |||||||| ||||||  || || |||||||||||||||||||||| ||||||    
T  10750280 ggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatg 10750348  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 18613161 - 18613086
Alignment:
Q  76 atggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 151  Q
    ||||||||||||||||||  ||||||| ||||||| || || |||| ||||||||||||||||| |||||| ||||    
T  18613161 atggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgcccat 18613086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 32678635 - 32678686
Alignment:
Q  95 gaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatg 32678686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 10748684 - 10748752
Alignment:
Q  78 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 146  Q
    |||||||||||||||| || ||||  |||||||||| || || ||||||||||| ||||||||||||||    
T  10748684 ggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatg 10748752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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