View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_11 (Length: 377)
Name: NF2475_low_11
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 35189565 - 35189282
Alignment:
| Q |
1 |
agttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaat |
100 |
Q |
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| T |
35189565 |
agttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaat |
35189466 |
T |
|
| Q |
101 |
ttcccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttc |
200 |
Q |
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| T |
35189465 |
ttcccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttc |
35189366 |
T |
|
| Q |
201 |
tcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctga |
284 |
Q |
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| T |
35189365 |
tcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctga |
35189282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 43970925 - 43970824
Alignment:
| Q |
5 |
accagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcc |
104 |
Q |
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| T |
43970925 |
accagcaacatcttgagtatcataaacaccacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttcc |
43970826 |
T |
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| Q |
105 |
ca |
106 |
Q |
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|| |
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| T |
43970825 |
ca |
43970824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 43970669 - 43970595
Alignment:
| Q |
183 |
accttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatca |
257 |
Q |
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| T |
43970669 |
accttgttgagatgtctttcaagctgttcatcgatgcttttcagatcaatctgatctgctcttacaaacccatca |
43970595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 1663862 - 1663755
Alignment:
| Q |
4 |
taccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttc |
103 |
Q |
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|||||||||||||| ||||||||| | |||||| ||||||||||| ||||| |||||||| | |||| | ||||| || || |||||||||||||| || |
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| T |
1663862 |
taccagcaacatctatgccatcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctc |
1663763 |
T |
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| Q |
104 |
ccactctt |
111 |
Q |
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||| |||| |
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| T |
1663762 |
ccattctt |
1663755 |
T |
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