View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_12 (Length: 377)
Name: NF2475_low_12
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 35189624 - 35189815
Alignment:
| Q |
90 |
acactcactcctcaaaccgactaaaccgccaaattcgtccctactttgtaagacgctctacaatagtttcatgatattatgaatatttcaaaaagnnnnn |
189 |
Q |
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| T |
35189624 |
acactcactcctcaaaccgactaaaccgccaaattcgtccctactttgtaagacgctctacaatagttccatgatattatgaatatttcaaaaagttttt |
35189723 |
T |
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| Q |
190 |
nnactccgtcaaaatttacttgtattagtcattttgagagtatgctaggaatcgacactaagtggttgaatagtatagagatcccctaaaat |
281 |
Q |
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| T |
35189724 |
ttactccgtcaaaatttacttgtattggtcattttgagagtatgctaggaattgacactaagtggttgaatagtatagagatcccctaaaat |
35189815 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 4791343 - 4791270
Alignment:
| Q |
111 |
taaaccgccaaattcgtccct-actttgtaagacgctctacaatagtttcatgatattatgaatatttcaaaaa |
183 |
Q |
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|||||| ||||||| |||| | |||||||| || || || |||||||||||||| ||||||||||||||||||| |
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| T |
4791343 |
taaaccaccaaattagtccttgactttgtatgatgcacttcaatagtttcatgagattatgaatatttcaaaaa |
4791270 |
T |
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