View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2475_low_13 (Length: 367)

Name: NF2475_low_13
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2475_low_13
NF2475_low_13
[»] chr5 (1 HSPs)
chr5 (9-335)||(29506822-29507148)
[»] chr3 (2 HSPs)
chr3 (10-330)||(8343177-8343497)
chr3 (68-335)||(26728828-26729095)
[»] scaffold0017 (2 HSPs)
scaffold0017 (58-330)||(181169-181441)
scaffold0017 (67-332)||(170091-170356)
[»] scaffold0061 (1 HSPs)
scaffold0061 (67-332)||(28436-28701)
[»] chr1 (7 HSPs)
chr1 (76-332)||(11543734-11543990)
chr1 (9-330)||(44613223-44613543)
chr1 (208-332)||(17810959-17811083)
chr1 (208-332)||(35899798-35899922)
chr1 (10-115)||(44794953-44795058)
chr1 (245-332)||(44145722-44145809)
chr1 (208-270)||(44794836-44794898)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 29507148 - 29506822
Alignment:
Q  9 caacaatatcaccggcaaggttcccaatttcgaactcgattttaccgaaagtcctgagatagatttgagttcaaatcaacttgaaggttccattccttct 108  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||     
T  29507148 caacaatatcatcggcaaggttcccaatttggaacttgagtttaccaaaagtcctaaaataaatttgagttcaaatcaacttgaaggttccattccttcc 29507049  T
Q  109 tttttatatcaagcagtagcactgcgtctttcccataataaattttcagatttagcttcctttctatgcaacaatagcaagcctaacaatctggaagtgt 208  Q
    ||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||    
T  29507048 tttttatttcaagcagttgcactgcatctttccaataataaattttcagatttagcttcctttgtatgcaacaatagtaagcctaacaatctggcaatgt 29506949  T
Q  209 tggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttacctcattacagtttgttgaactgagcaataacaagttgtcggg 308  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  29506948 tggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattacagtttgttgaactgagcaataacaacttgtcggg 29506849  T
Q  309 taagattccaatatcaatgggtgctct 335  Q
    |||||||||| | ||||||||||||||    
T  29506848 taagattccattctcaatgggtgctct 29506822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 330
Target Start/End: Original strand, 8343177 - 8343497
Alignment:
Q  10 aacaatatcaccggcaaggttcccaatttcgaactcgattttaccgaaagtcctgagatagatttgagttcaaatcaacttgaaggttccattccttctt 109  Q
    |||||||||||||||||  || |||||||  ||||||||| |||| | | |||||| |||||||||||||||||  ||||||||||||||||||| ||      
T  8343177 aacaatatcaccggcaacatttccaatttgaaactcgattatacctacaatcctgaaatagatttgagttcaaacaaacttgaaggttccattccctcac 8343276  T
Q  110 ttttatatcaagcagtagcactgcgtctttcccataataaattttcagatttagcttcctttctatgcaacaatagcaagcctaacaatctggaagtgtt 209  Q
    ||||||  |||||||||||| ||| ||| ||| ||||||||||||||||| ||| |||||| ||||||| ||| |  |  |||||| || ||| | | ||    
T  8343277 ttttattgcaagcagtagcattgcatctctccaataataaattttcagatatagtttccttactatgcagcaaaattagacctaactatttgggactttt 8343376  T
Q  210 ggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttacctcattacagtttgttgaactgagcaataacaagttgtcgggt 309  Q
    |||| | |||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||| | | | |||| || || |||||||||||||||||     
T  8343377 ggatgtatcaaacaatgaattaaagggtgagttgcccgattgttggaataatttaacctcattatactatcttgaccttagtaataacaagttgtcggga 8343476  T
Q  310 aagattccaatatcaatgggt 330  Q
    ||||||||| | |||||||||    
T  8343477 aagattccattctcaatgggt 8343497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 68 - 335
Target Start/End: Original strand, 26728828 - 26729095
Alignment:
Q  68 tagatttgagttcaaatcaacttgaaggttccattccttcttttttatatcaagcagtagcactgcgtctttcccataataaattttcagatttagcttc 167  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||   |||||  ||| ||| | ||| ||| |||||||||||||||||||| ||||    
T  26728828 tagatttgagttcaaatcaactcgaaggttccattccttcttttttacgacaagccctaggactacatctctccaataataaattttcagatttaacttc 26728927  T
Q  168 ctttctatgcaacaatagcaagcctaacaatctggaagtgttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttacc 267  Q
    |||| |||||| ||| || |||||||||| | |||   |||||||||| ||||||||  |||||||||  |||||||||||||||||||||||| |  |     
T  26728928 ctttatatgcagcaaaagtaagcctaacattttggcgatgttggatttatcaaacaatcaattaaaggacgagttgcctgattgttggaataatttagca 26729027  T
Q  268 tcattacagtttgttgaactgagcaataacaagttgtcgggtaagattccaatatcaatgggtgctct 335  Q
    |||||||| | ||||||  |||||||||||||||||| ||| || ||||||   ||||||||||||||    
T  26729028 tcattacactatgttgacttgagcaataacaagttgtggggaaatattccatcctcaatgggtgctct 26729095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 58 - 330
Target Start/End: Original strand, 181169 - 181441
Alignment:
Q  58 agtcctgagatagatttgagttcaaatcaacttgaaggttccattccttcttttttatatcaagcagtagcactgcgtctttcccataataaattttcag 157  Q
    |||||| | ||||||||||||| ||||||| ||||||||| ||||||||  |||||||  ||||||| |||| | |  |||||| |||||||||||||||    
T  181169 agtcctcatatagatttgagtttaaatcaatttgaaggttgcattcctttatttttattgcaagcaggagcagtacaactttccgataataaattttcag 181268  T
Q  158 atttagcttcctttctatgcaacaatagcaagcctaacaatctggaagtgttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaa 257  Q
    |||||||||||||   ||||| ||| || ||||| | |||| ||| | | |||||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  181269 atttagcttccttcacatgcagcaaaagtaagccaagcaatttggtaattttggatttatcaagcaatgaattaaagggtgagttgcctgattgttggaa 181368  T
Q  258 taatcttacctcattacagtttgttgaactgagcaataacaagttgtcgggtaagattccaatatcaatgggt 330  Q
    | || | ||||||||||| | |||||| |||||||||||||||||||| || ||||||||  | |||||||||    
T  181369 tgatttaacctcattacaatatgttgatctgagcaataacaagttgtccggaaagattcccttctcaatgggt 181441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 67 - 332
Target Start/End: Original strand, 170091 - 170356
Alignment:
Q  67 atagatttgagttcaaatcaacttgaaggttccattccttcttttttatatcaagcagtagcactgcgtctttcccataataaattttcagatttagctt 166  Q
    |||||||||| |||||||||  || ||||||||||||||||||| || |  || |||  ||||||   ||||||| ||||||||||||||||||||| ||    
T  170091 atagatttgatttcaaatcagtttaaaggttccattccttctttcttgtcgcaggcaagagcactatatctttccaataataaattttcagatttagttt 170190  T
Q  167 cctttctatgcaacaatagcaagcctaacaatctggaagtgttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttac 266  Q
    ||||||||||||| |  |  |||||||||| | ||||||| |||||  |  ||||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  170191 cctttctatgcaatagaaataagcctaacattttggaagttttggaaatagcaaacaatgaattaaagggcgagttgcctgattgttggaataatctaac 170290  T
Q  267 ctcattacagtttgttgaactgagcaataacaagttgtcgggtaagattccaatatcaatgggtgc 332  Q
    ||||||| | |||||||| || ||||||||||| || | ||| || ||||| || |||||||||||    
T  170291 ctcattaaaatttgttgacctcagcaataacaaattatggggaaaaattcccatctcaatgggtgc 170356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 67 - 332
Target Start/End: Complemental strand, 28701 - 28436
Alignment:
Q  67 atagatttgagttcaaatcaacttgaaggttccattccttcttttttatatcaagcagtagcactgcgtctttcccataataaattttcagatttagctt 166  Q
    |||||||||| |||||||||  || ||||||||||||||||||| || |  || |||  ||||||   ||||||| ||||||||||||||||||||| ||    
T  28701 atagatttgatttcaaatcagtttaaaggttccattccttctttcttgtcgcaggcaagagcactatatctttccaataataaattttcagatttagttt 28602  T
Q  167 cctttctatgcaacaatagcaagcctaacaatctggaagtgttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttac 266  Q
    ||||||||||||| |  |  |||||||||| | ||||||| |||||  |  ||||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  28601 cctttctatgcaatagaaataagcctaacattttggaagttttggaaatagcaaacaatgaattaaagggcgagttgcctgattgttggaataatctaac 28502  T
Q  267 ctcattacagtttgttgaactgagcaataacaagttgtcgggtaagattccaatatcaatgggtgc 332  Q
    ||||||| | |||||||| || ||||||||||| || | ||| || ||||| || |||||||||||    
T  28501 ctcattaaaatttgttgacctcagcaataacaaattatggggaaaaattcccatctcaatgggtgc 28436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 76 - 332
Target Start/End: Complemental strand, 11543990 - 11543734
Alignment:
Q  76 agttcaaatcaacttgaaggttccattccttcttttttatatcaagcagtagcactgcgtctttcccataataaattttcagatttagcttcctttctat 175  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||| ||| ||| |||||||||||||||||||||  ||||||||||    
T  11543990 agttcaaatcaacttgaaggttccattccttctcttttattgcaagcagtagcattgcatctctccaataataaattttcagatttagtgtcctttctat 11543891  T
Q  176 gcaacaatagcaagcctaacaatctggaagtgttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttacctcattaca 275  Q
    ||| |||||  || ||||||  ||| |   | |||||| | ||||||||  |||||||||||||| |||||||||||||||||||| | |||||  || |    
T  11543890 gcagcaatattaaacctaactctctaggccttttggatatatcaaacaatcaattaaagggtgagctgcctgattgttggaataatttaacctcgctata 11543791  T
Q  276 gtttgttgaactgagcaataacaagttgtcgggtaagattccaatatcaatgggtgc 332  Q
     | |||||| || || ||||||||||||||||| ||||| ||| | || ||||||||    
T  11543790 ctatgttgacctcagtaataacaagttgtcgggaaagatcccattgtcgatgggtgc 11543734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 44613223 - 44613543
Alignment:
Q  9 caacaatatcaccggcaaggttcccaatttcgaactcgattttaccgaaagtcctgagatagatttgagttcaaatcaacttgaaggttccattccttct 108  Q
    |||||||||||| |||| | |||| ||||| |||||| || ||||| | | | ||  |||| ||||||||||||||||  ||||||||||||||||||||    
T  44613223 caacaatatcacaggcatgattcctaatttggaactcaatcttaccaacaatactatgataaatttgagttcaaatcagtttgaaggttccattccttct 44613322  T
Q  109 tttttatatcaagcagtagcactgcgtctttcccataataaattttcagatttagcttcctttctatgcaacaatagcaagcctaacaatctggaagtgt 208  Q
    |||||||  ||||||| ||||||   ||| ||| ||||||| ||||||||||||| ||  |||||||||||||  || ||  |||||| | ||||| | |    
T  44613323 tttttattgcaagcaggagcactatttctgtccaataataacttttcagatttag-tttttttctatgcaacagaagtaattctaacattttggaaattt 44613421  T
Q  209 tggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttacctcattacagtttgttgaactgagcaataacaagttgtcggg 308  Q
    ||||||| ||||||||  || ||||||||||||| |||||||||||||||||||| ||||| ||| | ||||||||  | || |||||||| || | |||    
T  44613422 tggatttatcaaacaatcaaataaagggtgagttacctgattgttggaataatctaacctcgttaaaatttgttgacttaagaaataacaaattatgggg 44613521  T
Q  309 taagattccaatatcaatgggt 330  Q
     ||||||||| | |||||||||    
T  44613522 aaagattccattctcaatgggt 44613543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 17811083 - 17810959
Alignment:
Q  208 ttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatctta-cctcattacagtttgttgaactgagcaataacaagttgtcg 306  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| |||||||| || || ||||||||||||||     
T  17811083 ttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataa-cttagcatcattacaatttgttgacctcagaaataacaagttgtca 17810985  T
Q  307 ggtaagattccaatatcaatgggtgc 332  Q
    || ||||||||  | |||||||||||    
T  17810984 ggaaagattcccttctcaatgggtgc 17810959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 35899798 - 35899922
Alignment:
Q  208 ttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttacctcattacagtttgttgaactgagcaataacaagttgtcgg 307  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |  |||||||||| | | |||| ||||| |||||||||||||| |    
T  35899798 ttggacttgtcaaacaatgaattaaagggtgagttgtctgattgttggaataatttatcctcattacaatatattgacctgagaaataacaagttgtctg 35899897  T
Q  308 gtaagattccaatatcaatgggtgc 332  Q
    | ||||||||  | |||||||||||    
T  35899898 gaaagattcccttctcaatgggtgc 35899922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 44795058 - 44794953
Alignment:
Q  10 aacaatatcaccggcaaggttcccaatttcgaactcgattttaccgaaagtcctgagatagatttgagttcaaatcaacttgaaggttccattccttctt 109  Q
    ||||||||||| |||| | |||| ||||| |||||| || ||||| ||| |||||  ||||||||||||||||||||  ||||||||||||||||||| |    
T  44795058 aacaatatcacaggcatgattcctaatttggaactcaatcttaccaaaattcctgtaatagatttgagttcaaatcagtttgaaggttccattccttcct 44794959  T
Q  110 ttttat 115  Q
    ||||||    
T  44794958 ttttat 44794953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 44145722 - 44145809
Alignment:
Q  245 ctgattgttggaataatcttacctcattacagtttgttgaactgagcaataacaagttgtcgggtaagattccaatatcaatgggtgc 332  Q
    ||||||||||||||||| | ||| | |||  ||||||||| | |||||||||||||||||| || ||||||||||| |||||||||||    
T  44145722 ctgattgttggaataatttaaccgcgttaaggtttgttgatcagagcaataacaagttgtcaggaaagattccaatctcaatgggtgc 44145809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 44794898 - 44794836
Alignment:
Q  208 ttggatttgtcaaacaacgaattaaagggtgagttgcctgattgttggaataatcttacctca 270  Q
    |||||| | |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  44794898 ttggatatatcaaacaatgaattaaagggagagttgcctgattgttggaataatctaacctca 44794836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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