View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_15 (Length: 352)
Name: NF2475_low_15
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 28 - 323
Target Start/End: Complemental strand, 20477559 - 20477264
Alignment:
| Q |
28 |
caagatgaattgcttaaagtcttgggtgcccgactacccttcaagagtgctgaacacgataattatgatcagattaagctagggattcaagatgaggcga |
127 |
Q |
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| T |
20477559 |
caagatgaattgcttaaagtcttgggtgtgcgactacccttcaagagtgctgaacatgataattatgatcagattaagctagggattcaagatgaggcga |
20477460 |
T |
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| Q |
128 |
aagatgtagaaataattgtcgatggagccgaggcgggtgatgtttttctctctagaacctgagatcgttctcgttcccacatagttgattaaagggattg |
227 |
Q |
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| T |
20477459 |
aagatgtagaaataattgtcgatggagccgaggcgggtgatgtttttcgctctagaacctgagatcgttcttgttcccacatagttgattaaagggattg |
20477360 |
T |
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| Q |
228 |
ggggtatgatcttagttgatgtatttttagtttaaccactgatttagtaacattcctatctatatataggagttctatgtttggcttatttgtaat |
323 |
Q |
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| T |
20477359 |
ggggtatgatcttagttgatgtatttttagtttaaccactgatttagtaacattcctatctacatatacgagttctatgtttggcttatttgtaat |
20477264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 28 - 318
Target Start/End: Original strand, 45285667 - 45285957
Alignment:
| Q |
28 |
caagatgaattgcttaaagtcttgggtgcccgactacccttcaagagtgctgaacacgataattatgatcagattaagctagggattcaagatgaggcga |
127 |
Q |
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|||||||| ||||| ||||||||||||| |||||||||||||||||||||||| | |||||| |||||| ||||||||||| ||||||| |||||| |
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| T |
45285667 |
caagatgacttgctccaagtcttgggtgcgtgactacccttcaagagtgctgaactcagtaattacgatcagtttaagctagggcttcaagacgaggcgg |
45285766 |
T |
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| Q |
128 |
aagatgtagaaataattgtcgatggagccgaggcgggtgatgtttttctctctagaacctgagatcgttctcgttcccacatagttgattaaagggattg |
227 |
Q |
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| T |
45285767 |
aagatgtagaaataattgtcgatggagcagaggagggtgatgtttttcactccagaacccgaggtcgttacc--acatatatagttgattaagtttattg |
45285864 |
T |
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| Q |
228 |
ggggtatgatcttagttgatg--tatttttagtttaaccactgatttagtaacattcctatctatatataggagttctatgtttggcttattt |
318 |
Q |
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| T |
45285865 |
ggggtatgatcttagttgatgcatttttttagtgtaatcactgatttagtaacattcttatctatagatatgaattctatatttggcttattt |
45285957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 18063231 - 18063305
Alignment:
| Q |
219 |
aagggattgggggtatgatcttagttgat--gtatttttagtttaaccactgatttagtaacattcctatctata |
291 |
Q |
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||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||||| |
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| T |
18063231 |
aagggattgggggtatgatcttagttgattcatttttttagtttttttactgatttagtaatattcctatctata |
18063305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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