View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2475_low_16 (Length: 347)

Name: NF2475_low_16
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2475_low_16
NF2475_low_16
[»] chr5 (5 HSPs)
chr5 (69-239)||(39941586-39941756)
chr5 (50-159)||(39941776-39941885)
chr5 (85-146)||(14295454-14295515)
chr5 (89-150)||(35135727-35135788)
chr5 (85-125)||(32059650-32059690)
[»] chr3 (7 HSPs)
chr3 (7-59)||(34899923-34899975)
chr3 (84-136)||(13481253-13481305)
chr3 (102-145)||(6241162-6241205)
chr3 (87-120)||(28741349-28741382)
chr3 (95-131)||(13529314-13529350)
chr3 (161-189)||(47290610-47290638)
chr3 (102-150)||(53457321-53457369)
[»] chr6 (3 HSPs)
chr6 (89-150)||(10452425-10452486)
chr6 (90-131)||(30522506-30522547)
chr6 (85-125)||(2027467-2027507)
[»] scaffold0153 (2 HSPs)
scaffold0153 (87-125)||(6561-6599)
scaffold0153 (87-125)||(13581-13619)
[»] chr8 (3 HSPs)
chr8 (92-150)||(3645884-3645942)
chr8 (85-150)||(1470917-1470982)
chr8 (89-125)||(29973050-29973086)
[»] chr2 (3 HSPs)
chr2 (87-125)||(1160807-1160845)
chr2 (93-150)||(17952770-17952827)
chr2 (89-125)||(31740024-31740060)
[»] chr4 (1 HSPs)
chr4 (89-150)||(49219083-49219144)
[»] chr1 (5 HSPs)
chr1 (102-151)||(45107566-45107614)
chr1 (85-150)||(49517014-49517079)
chr1 (96-132)||(5150899-5150935)
chr1 (89-125)||(10581142-10581178)
chr1 (85-125)||(48830137-48830177)
[»] chr7 (1 HSPs)
chr7 (85-125)||(31002730-31002770)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 39941756 - 39941586
Alignment:
Q  69 tgtgagattatttatgacagcttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttatagctttatctttaaaaata 168  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39941756 tgtgaaattatttttgacaacttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttatagctttatctttaaaaata 39941657  T
Q  169 acttatacataatcacttaccatgctttaacacttaattaagttgtgtatccaatcaggcttcaaaattat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39941656 acttatacataatcacttaccatgctttaacacttaattaagttgtgtatccaatcaggctttaaaattat 39941586  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 39941885 - 39941776
Alignment:
Q  50 atataaacactatatcagctgtgagattatttatgacagcttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttat 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  39941885 atataagcactatatcagctgtgagattatttatgacagcttatagcttaattgaaaatagtttgactttattttaaattttcttatagaaacagcttaa 39941786  T
Q  150 agctttatct 159  Q
    ||||| ||||    
T  39941785 agcttaatct 39941776  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 14295515 - 14295454
Alignment:
Q  85 acagcttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagct 146  Q
    |||||||||||||||  |||||| |||||||||||||||||  |||| |||| |||| ||||    
T  14295515 acagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagct 14295454  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 35135727 - 35135788
Alignment:
Q  89 cttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    |||||||||||  ||||||||||||||||||||||||  |||| |||| |||| | ||||||    
T  35135727 cttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttata 35135788  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 32059650 - 32059690
Alignment:
Q  85 acagcttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  32059650 acagcttatagcttatatgaaaacagtttgactttatttta 32059690  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 34899975 - 34899923
Alignment:
Q  7 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacac 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899975 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacac 34899923  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 13481305 - 13481253
Alignment:
Q  84 gacagcttatagcttaattgaaaatagtttgactttattttaaattttcttat 136  Q
    |||| ||| ||||||| ||||||||||||||||||||||||| ||||| ||||    
T  13481305 gacaacttgtagcttatttgaaaatagtttgactttattttatattttgttat 13481253  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 6241162 - 6241205
Alignment:
Q  102 tgaaaatagtttgactttattttaaattttcttatcgaaacagc 145  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||    
T  6241162 tgaaaatagtttgactttattttaacttttgttatagaaacagc 6241205  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 28741349 - 28741382
Alignment:
Q  87 agcttatagcttaattgaaaatagtttgacttta 120  Q
    ||||||||||||||||||||||||||| ||||||    
T  28741349 agcttatagcttaattgaaaatagtttaacttta 28741382  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 13529314 - 13529350
Alignment:
Q  95 gcttaattgaaaatagtttgactttattttaaatttt 131  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  13529314 gcttatttgaaaatagtttgactttattttatatttt 13529350  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 47290638 - 47290610
Alignment:
Q  161 taaaaataacttatacataatcacttacc 189  Q
    |||||||||||||||||||||||||||||    
T  47290638 taaaaataacttatacataatcacttacc 47290610  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 53457369 - 53457321
Alignment:
Q  102 tgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    ||||||||||||||||||||||||  |||| ||||||||  ||||||||    
T  53457369 tgaaaatagtttgactttattttatcttttgttatcgaagtagcttata 53457321  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 10452425 - 10452486
Alignment:
Q  89 cttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    |||||||||||  |||||||||||||| ||||||||| ||||| |||| |||| ||||||||    
T  10452425 cttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttata 10452486  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 30522506 - 30522547
Alignment:
Q  90 ttatagcttaattgaaaatagtttgactttattttaaatttt 131  Q
    ||||||||||  |||||||||||| |||||||||||||||||    
T  30522506 ttatagcttatatgaaaatagtttcactttattttaaatttt 30522547  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 2027467 - 2027507
Alignment:
Q  85 acagcttatagcttaattgaaaatagtttgactttatttta 125  Q
    ||||||||||| |||  ||||||||||||||||||||||||    
T  2027467 acagcttataggttatatgaaaatagtttgactttatttta 2027507  T

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Target: scaffold0153 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 6561 - 6599
Alignment:
Q  87 agcttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  6561 agcttatagcttatatgaaaatagtttgactttatttta 6599  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 13581 - 13619
Alignment:
Q  87 agcttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  13581 agcttatagcttatatgaaaatagtttgactttatttta 13619  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 3645884 - 3645942
Alignment:
Q  92 atagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    ||||||||  |||||||||||||| ||| ||||| |||||||||| |||| ||||||||    
T  3645884 atagcttatatgaaaatagtttgattttgttttatattttcttatagaaatagcttata 3645942  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 1470917 - 1470982
Alignment:
Q  85 acagcttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    |||||||||||||||  ||||| || |||||||||||||||  |||| |||| |||| ||||||||    
T  1470917 acagcttatagcttatatgaaagtaatttgactttattttatcttttattatagaaatagcttata 1470982  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 29973086 - 29973050
Alignment:
Q  89 cttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||  ||||||||||||||||||||||||    
T  29973086 cttatagcttatgtgaaaatagtttgactttatttta 29973050  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 1160807 - 1160845
Alignment:
Q  87 agcttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  1160807 agcttatagcttatatgaaaatagtttgactttatttta 1160845  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 17952770 - 17952827
Alignment:
Q  93 tagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    |||||||  ||||||||||||||||||||||||  |||| |||| |||| ||||||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttata 17952827  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 31740024 - 31740060
Alignment:
Q  89 cttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||  ||||||||||||||||||||||||    
T  31740024 cttatagcttatatgaaaatagtttgactttatttta 31740060  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 49219144 - 49219083
Alignment:
Q  89 cttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    |||||||||||  |||||||| ||||||||||||||| ||||| |||| |||| | ||||||    
T  49219144 cttatagcttatatgaaaataatttgactttattttatattttgttatagaaataacttata 49219083  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 45107614 - 45107566
Alignment:
Q  102 tgaaaatagtttgactttattttaaattttcttatcgaaacagcttatag 151  Q
    ||||||||||||||||||||||| | ||||||||| |||| |||||||||    
T  45107614 tgaaaatagtttgactttatttt-atttttcttatagaaatagcttatag 45107566  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 49517079 - 49517014
Alignment:
Q  85 acagcttatagcttaattgaaaatagtttgactttattttaaattttcttatcgaaacagcttata 150  Q
    |||||||||||||||| |||||| | |||||||||||||||  |||| |||| |||| | ||||||    
T  49517079 acagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttata 49517014  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 5150935 - 5150899
Alignment:
Q  96 cttaattgaaaatagtttgactttattttaaattttc 132  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  5150935 cttaaatgaaaatagtttgactttattttatattttc 5150899  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 10581142 - 10581178
Alignment:
Q  89 cttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||| |||||| |||||||||||||||||    
T  10581142 cttatagcttaaatgaaaaaagtttgactttatttta 10581178  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 48830137 - 48830177
Alignment:
Q  85 acagcttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||| ||||||||||  ||||||||||||||||||||||||    
T  48830137 acagtttatagcttatatgaaaatagtttgactttatttta 48830177  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 31002770 - 31002730
Alignment:
Q  85 acagcttatagcttaattgaaaatagtttgactttatttta 125  Q
    |||||||||||||||  |||||||| |||||||||||||||    
T  31002770 acagcttatagcttatatgaaaatattttgactttatttta 31002730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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