View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_20 (Length: 302)
Name: NF2475_low_20
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_20 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 31182395 - 31182696
Alignment:
| Q |
1 |
tttaggaggcaacaatttcgttggcactcctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaaccttattggt |
100 |
Q |
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| T |
31182395 |
tttaggaggcaacaatttcgttggcactcctattcctcctgtgattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaaccttattggt |
31182494 |
T |
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| Q |
101 |
tctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaaccataggcaacatga |
200 |
Q |
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| T |
31182495 |
tctattccaaaagaaattgggtttttgacaaaccttacttatattgatttgtcaaacaaccttctttctggtgttatttctgaaaccataggcaacatga |
31182594 |
T |
|
| Q |
201 |
gtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacattatcttacttta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31182595 |
gtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacactatcttacttta |
31182694 |
T |
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| Q |
301 |
ta |
302 |
Q |
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|| |
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| T |
31182695 |
ta |
31182696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 31138680 - 31138963
Alignment:
| Q |
1 |
tttaggaggcaacaatttcgttggcactcctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaaccttattggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31138680 |
tttaggaggcaacaatttcgttggcactcctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaaccttattggt |
31138779 |
T |
|
| Q |
101 |
tctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaaccataggcaacatga |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |
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| T |
31138780 |
tctattccaaaagaaattgggtttttgacaaaccttactcttattgatttgtcaaacaacattctttctggtgttattcctgaaaccatagggaacatga |
31138879 |
T |
|
| Q |
201 |
gtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttga |
284 |
Q |
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| T |
31138880 |
gcaaattaaataaactctaccttgctaaaaacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttga |
31138963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 32 - 284
Target Start/End: Original strand, 31101334 - 31101586
Alignment:
| Q |
32 |
attcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaaccttattggttctattccaaaagaaatcgggtttttgacaa |
131 |
Q |
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|||||||||||||||||||||||||| |||||| ||| |||| ||||| | || ||| ||| ||||||| |||||| ||||||| || || ||||||| |
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| T |
31101334 |
attcctcctgagattggaaaattgaagaaattaaggtatctagcaattacacaaggtagcctagttggttccattccacaagaaattggtttgttgacaa |
31101433 |
T |
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| Q |
132 |
accttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaaccataggcaacatgagtaaattaaatttacttatcctttgtaataa |
231 |
Q |
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||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||||| |||||||| ||||||||| ||| || || |||||| |
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| T |
31101434 |
accttacttatattgatttgtcaaacaactttctatctggtgttatccctgaaaccatagggaacatgagcaaattaaatcaactcatgtttgctaataa |
31101533 |
T |
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| Q |
232 |
cacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttga |
284 |
Q |
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||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| |
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| T |
31101534 |
caccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttga |
31101586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 31056896 - 31057151
Alignment:
| Q |
29 |
cctattcctcctgagattggaaaattgaacaaattatggtttctatcaattcaaaaatgtaaccttattggttctattccaaaagaaatcgggtttttga |
128 |
Q |
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|||||||||||||||||||| ||||| ||||| |||| | ||| ||||||||||| ||||||| | ||||| |||||| ||||||| |||||||||| |
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| T |
31056896 |
cctattcctcctgagattggtaaattaaacaatttattgcatcttgcaattcaaaaaagtaacctagtcggttccattccacaagaaattgggtttttga |
31056995 |
T |
|
| Q |
129 |
caaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaaccataggcaacatgagtaaattaaatttacttatcctttgtaa |
228 |
Q |
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|||| ||| | ||||||||||||||||| ||| | | ||||||| |||||||||||||||||| ||| |||| |||||| || |||| | |||| ||| |
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| T |
31056996 |
caaatcttgcatatattgatttgtcaaaaaactctctatctggtggtattcctgaaaccatagggaacttgagcaaattagatacacttgttctttctaa |
31057095 |
T |
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| Q |
229 |
taacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttga |
284 |
Q |
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|||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31057096 |
taacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttga |
31057151 |
T |
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