View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_24 (Length: 265)
Name: NF2475_low_24
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 55 - 256
Target Start/End: Complemental strand, 5495447 - 5495246
Alignment:
| Q |
55 |
gtgtctcacttaatttgattaggcaaccgtttgttgtatatttagataacggttggtttagcggtgacttcaatattctcgtgtttcaatgttgtttaaa |
154 |
Q |
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| T |
5495447 |
gtgtctcacttaatttggctaggcgaccgtttgttgtatatttaaataatgtttggtttagcggtgacttcaatattcctgtgtttcaaagttgtttaaa |
5495348 |
T |
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| Q |
155 |
cttaaaaaatagaagctctaatttaaaggtttggataaaatgcatgttggatgagatatcccaccataaaaacaaacatgctattaattctaaaagaata |
254 |
Q |
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| T |
5495347 |
cttaaaaaatagaaactttaatttaaaagtttgggtaaaacgcacgttgggtgaggtatcccaccgtaaaaacaaacacgctattaattcgaaaagaata |
5495248 |
T |
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| Q |
255 |
at |
256 |
Q |
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|| |
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| T |
5495247 |
at |
5495246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5495500 - 5495467
Alignment:
| Q |
1 |
tggtgaataaattcttgctctttaacacagaaaa |
34 |
Q |
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| T |
5495500 |
tggtgaataaattcttgctctttaacacagaaaa |
5495467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 42140081 - 42140212
Alignment:
| Q |
107 |
ttggtttagcggtgacttcaatattctcgtgtttcaatgttgtttaaacttaaaaaatagaagctctaatttaaaggtttggataaaatgcatgttggat |
206 |
Q |
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| T |
42140081 |
ttggtttagcggtgacttcaatattctcgggtcccaatgctatttaaatgtaaaaaaaataagtttcaatttagagttttggagagaatgcatgttgagt |
42140180 |
T |
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| Q |
207 |
gagatatcccaccataaaaacaaacatgctat |
238 |
Q |
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| T |
42140181 |
gaggtaccccaccgcaaaaacaaacacgctat |
42140212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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