View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_25 (Length: 256)
Name: NF2475_low_25
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 45927059 - 45926839
Alignment:
| Q |
30 |
gattctcctcctcaatctcaatagcagctctaagaataggcacaatagatgaaagtgaagaaggagcaatctcactatccacaatattttcttcattttg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45927059 |
gattctcctcctcaatctcaatagcagctctaagaataggcagaatagatgaaagtgaagaaggagcaatctcactatccacaatattttcttcattttg |
45926960 |
T |
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| Q |
130 |
caactcatcaacggtccttgttggttcccttatcatccgctttgttctactggtactagccatgtttctgccacaccaaaaacacgatcaccaatgcaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45926959 |
caactcatcaacggtccttgttggttcccttatcatccgctttgttctactggtactaaccatgtttctgccacaccaaaaacacgatcaccaatgcaat |
45926860 |
T |
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| Q |
230 |
gttaaagtttcttcttttctc |
250 |
Q |
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||||||||||||||||||||| |
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| T |
45926859 |
gttaaagtttcttcttttctc |
45926839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 15805591 - 15805451
Alignment:
| Q |
30 |
gattctcctcctcaatctcaatagcagctctaagaataggcacaatagatgaaagtgaagaaggagcaatctcactatccacaatattttcttcattttg |
129 |
Q |
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|||||||| | |||||||||||||| ||||||||||| || |||| | | ||| ||||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
15805591 |
gattctccccttcaatctcaatagctgctctaagaattggaacaagaacagcaagagaagaaggaacaatctcactatccataatattttcttcatttgg |
15805492 |
T |
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| Q |
130 |
caactcatcaacggtccttgttggttcccttatcatccgctttg |
173 |
Q |
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| T |
15805491 |
caa---ttcaacagtccttgtaggtgcccttatcatcctctttg |
15805451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 15805367 - 15805325
Alignment:
| Q |
208 |
aaaacacgatcaccaatgcaatgttaaagtttcttcttttctc |
250 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15805367 |
aaaacacgatcaccaatgcaagtttaaagtttcttcttttctc |
15805325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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