View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2475_low_26 (Length: 253)

Name: NF2475_low_26
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2475_low_26
NF2475_low_26
[»] chr1 (3 HSPs)
chr1 (1-232)||(15364912-15365158)
chr1 (24-107)||(7347687-7347773)
chr1 (36-109)||(32029814-32029890)
[»] chr5 (3 HSPs)
chr5 (79-123)||(37056345-37056389)
chr5 (20-67)||(4787949-4787996)
chr5 (20-58)||(34556509-34556547)
[»] chr6 (4 HSPs)
chr6 (70-107)||(10755598-10755635)
chr6 (25-87)||(14399829-14399893)
chr6 (20-70)||(431015-431065)
chr6 (25-98)||(2732939-2733015)
[»] chr8 (1 HSPs)
chr8 (44-107)||(36145283-36145346)
[»] chr4 (2 HSPs)
chr4 (20-108)||(13298522-13298613)
chr4 (71-123)||(7295023-7295075)
[»] chr2 (2 HSPs)
chr2 (22-67)||(27242756-27242801)
chr2 (70-98)||(41631914-41631942)
[»] chr7 (1 HSPs)
chr7 (36-95)||(7245942-7246004)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 15364912 - 15365158
Alignment:
Q  1 tcaaatttagatgcgttgaagtgctatagtgcctgtatagccgctatttaacaacactttgtactaagtatatcacaaaacaatagcaatttgttcaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15364912 tcaaatttagatgcgttgaagtgctatagtgcctgtatagccgctatttaacaacactttgtactaagtatatcacaaaacaatagcaatttgttcaagt 15365011  T
Q  101 tctgctacgatgtagcactatagtgctactactacacaattgatttgcttctaatagttcaagatatattaaaggaaagaa---------------ctac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||    
T  15365012 tctgctacgatgtagcactatagtgctactactacacaattgatttgcttctaatagttcaagatatattaaaggaaagaactacaaattcaaaatctac 15365111  T
Q  186 aagaacaagaatgttagaccattaccataccatgattattgatgatg 232  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  15365112 aagaacaagaacgttagaccattaccataccatgattattgatgatg 15365158  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 7347773 - 7347687
Alignment:
Q  24 ctatagtgcctgtatagccgctatttaacaacactttgtactaagta---tatcacaaaacaatagcaatttgttcaagttctgcta 107  Q
    |||||| |||| |||||||||||||| |||| | |||||||||| ||   |||  ||||||||||||||||||||||| ||||||||    
T  7347773 ctatagcgcctctatagccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgcta 7347687  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 32029814 - 32029890
Alignment:
Q  36 tatagccgctatttaacaacactttgtacta---agtatatcacaaaacaatagcaatttgttcaagttctgctacg 109  Q
    |||||||||||||| |||||  |||||||||   ||||||||| | |||||||||||||||||  ||||||||||||    
T  32029814 tatagccgctatttgacaactgtttgtactacgtagtatatcatagaacaatagcaatttgtttgagttctgctacg 32029890  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 37056389 - 37056345
Alignment:
Q  79 aacaatagcaatttgttcaagttctgctacgatgtagcactatag 123  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  37056389 aacaatagcaatttgttcaagttctactacgatgtagcgctatag 37056345  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 4787996 - 4787949
Alignment:
Q  20 agtgctatagtgcctgtatagccgctatttaacaacactttgtactaa 67  Q
    ||||||||||||||||| ||||| |||||| |||||| ||||||||||    
T  4787996 agtgctatagtgcctgtgtagccactatttgacaacattttgtactaa 4787949  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 34556547 - 34556509
Alignment:
Q  20 agtgctatagtgcctgtatagccgctatttaacaacact 58  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  34556547 agtgctatagtgccactatagccgctatttaacaacact 34556509  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 10755635 - 10755598
Alignment:
Q  70 atatcacaaaacaatagcaatttgttcaagttctgcta 107  Q
    |||||||| |||||||||||||||||||||||||||||    
T  10755635 atatcacagaacaatagcaatttgttcaagttctgcta 10755598  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 14399893 - 14399829
Alignment:
Q  25 tatagtgcctgtatagccgctatttaacaacactttgtactaagta--tatcacaaaacaatagc 87  Q
    ||||| |||| |||||| ||||||| ||||||||||||||||| ||  |||||||||||||||||    
T  14399893 tatagagcctctatagctgctatttgacaacactttgtactaaatagctatcacaaaacaatagc 14399829  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 431065 - 431015
Alignment:
Q  20 agtgctatagtgcctgtatagccgctatttaacaacactttgtactaagta 70  Q
    |||||||||| || | ||||||||||||||||||| | |||||||||||||    
T  431065 agtgctatagcgcatctatagccgctatttaacaatattttgtactaagta 431015  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 2733015 - 2732939
Alignment:
Q  25 tatagtgcctgtatagccgctatttaacaacactttgtactaagta---tatcacaaaacaatagcaatttgttcaa 98  Q
    ||||| |||| |||||| ||||||| |||||| |||||||||| ||   |||| |||||||||||| ||||||||||    
T  2733015 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaa 2732939  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 36145346 - 36145283
Alignment:
Q  44 ctatttaacaacactttgtactaagtatatcacaaaacaatagcaatttgttcaagttctgcta 107  Q
    |||||| |||||| |||||||||| |||| |||||||||||| |||||  ||||| ||||||||    
T  36145346 ctatttgacaacattttgtactaaatatagcacaaaacaatatcaattgattcaaattctgcta 36145283  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 13298613 - 13298522
Alignment:
Q  20 agtgctatagtgcctgtatagccgctatttaacaacactttgtacta---agtatatcacaaaacaatagcaatttgttcaagttctgctac 108  Q
    ||||||||||||||  ||||| | |||||| ||| ||||||||||||   || |||||||| ||||||||  |||||||||| ||| |||||    
T  13298613 agtgctatagtgccattatagtcactatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaattccgctac 13298522  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 7295075 - 7295023
Alignment:
Q  71 tatcacaaaacaatagcaatttgttcaagttctgctacgatgtagcactatag 123  Q
    ||||||||||||||||  |||||||||| ||| |||||||| |||| ||||||    
T  7295075 tatcacaaaacaatagtgatttgttcaaattcggctacgatatagcgctatag 7295023  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 27242756 - 27242801
Alignment:
Q  22 tgctatagtgcctgtatagccgctatttaacaacactttgtactaa 67  Q
    |||||||||||  ||||||||| ||||| |||||||||||||||||    
T  27242756 tgctatagtgctggtatagccgttatttgacaacactttgtactaa 27242801  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 41631914 - 41631942
Alignment:
Q  70 atatcacaaaacaatagcaatttgttcaa 98  Q
    |||||||||||||||||||||||||||||    
T  41631914 atatcacaaaacaatagcaatttgttcaa 41631942  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 7245942 - 7246004
Alignment:
Q  36 tatagccgctatttaacaacactttgtactaagta---tatcacaaaacaatagcaatttgtt 95  Q
    |||||||||||||| ||||||||||||||||| ||   |||| ||||| |||||| |||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagcgtatcgcaaaagaatagcgatttgtt 7246004  T

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