View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_29 (Length: 217)
Name: NF2475_low_29
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_29 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 1252076 - 1252183
Alignment:
| Q |
4 |
cacactctcactgactgcctgtgtactgccggcaactgctttaccagcagttcagctcctgccacactgacactgtgtgcatcacggtaactgcaagtct |
103 |
Q |
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| T |
1252076 |
cacactctcgctggctgcctgtgtgctgccggcaactgctttaccagcagttcagctcctgccacactgacaccgtgtgcatcgcggtaactgcaagtct |
1252175 |
T |
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| Q |
104 |
gctacttc |
111 |
Q |
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| T |
1252176 |
gcaacttc |
1252183 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 1252616 - 1252661
Alignment:
| Q |
137 |
acccatagtacatagaaggaagaacc-ttattcataaaataataca |
181 |
Q |
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| T |
1252616 |
acccatagaacatagaaggaagaacctttattcataaaataataca |
1252661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 42019406 - 42019486
Alignment:
| Q |
137 |
acccatagtacatagaaggaagaaccttattcataaaataatacagaggaaggaaccttgcatgattaggtggtgacaaac |
217 |
Q |
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| T |
42019406 |
acccatagaacatagaaggaagaaccttattcataaaataatacagaggaaggaactttgcatgattaggtggtgacaaac |
42019486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 42018857 - 42018956
Alignment:
| Q |
10 |
ctcactgactgcctgtgtactgccggcaactgctttaccagcagttcagctcctgccacactgacactgtgtgcatcacggtaactgcaagtctgctact |
109 |
Q |
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| T |
42018857 |
ctcactggctgcctgtgtgctgccggcaactgcttta-cagcagttcagctcctgccaca-tgacaccgtgtgcatcgcggtaactgcaagtctgcaact |
42018954 |
T |
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