View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_3 (Length: 439)
Name: NF2475_low_3
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 7763001 - 7762565
Alignment:
| Q |
1 |
gtccggtgtaacggataaaacggtgtttgggaggatggaacattggttggtgaagagcgagatgaagcgttgttcgattgaagaggatgcttttatggag |
100 |
Q |
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| T |
7763001 |
gtccggtgtaacggataaaacggtgtttgggaggatggaacattggttggtgaagagcgagatgaagcgttgttcgattgaagaggatgctttgatggag |
7762902 |
T |
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| Q |
101 |
agttgttgggagataagggttttgatgagagagaagaaaggtgtgatagcgtttgagtttgagaattggggtggagggaaggtgttgatgatggtggaaa |
200 |
Q |
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| T |
7762901 |
agttgttgggagattagggttttgatgagagagaagaaaggtgtgatagcgtttgagtttgagaattggggtggagggaaggtgttgatgatggtggaaa |
7762802 |
T |
|
| Q |
201 |
ggagtgggtcagcggcgcggaggtggttgagtgcggcggtgatttcgttttgtgatgttaatggttttgggattattggtgtgagaagaggaaagtgtgg |
300 |
Q |
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| T |
7762801 |
ggagtgggtcagcagcgcggaggtggttgagtgcggcggtgatttcgttttgtgatgttaatggtttttggattattggtgtgagaaggggaaagtgtgg |
7762702 |
T |
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| Q |
301 |
ttttttcacttcttctttggttttgatggtgggttttaggannnnnnnggcggggaaggtgatttttgaagagattaaggttttgattgggggttgtgga |
400 |
Q |
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| T |
7762701 |
ttttttcacttcttctttggttttgatggtgggtttaaggatttttttggcggggaaggtgatttttgaagagattaaggttttgattgggggttgtgga |
7762602 |
T |
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| Q |
401 |
tttgtgatgggtgtggggttggatattattcgagatc |
437 |
Q |
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|||||||||||||||||||||||| | ||| |||||| |
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| T |
7762601 |
tttgtgatgggtgtggggttggatttgatttgagatc |
7762565 |
T |
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