View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2475_low_7 (Length: 399)
Name: NF2475_low_7
Description: NF2475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2475_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 101 - 276
Target Start/End: Original strand, 5021468 - 5021643
Alignment:
| Q |
101 |
atgtatacccaacgtgactcacgccgttgggttatacatctgcatcacacacgagtattttggaagagagcattttttgttggaagaagagcaattttct |
200 |
Q |
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| T |
5021468 |
atgtatacccaacgtgactcacgccgttgggttatacatctgcatcacacacgagtattttggaagagagcattttttgttgggagaagagcaatttcct |
5021567 |
T |
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| Q |
201 |
tacatgtaactatgaaatttatgagtcatagagatattcattcacaccatgcattctgatgttttaggtgttgata |
276 |
Q |
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| T |
5021568 |
tacatgtaactatgaaatttatgagtcatagagatattcattcacaccatgcattctgatgttttaggtgttgata |
5021643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 5021706 - 5021745
Alignment:
| Q |
339 |
ataacacaatttttctttaattgattcatgttcatgtgaa |
378 |
Q |
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| T |
5021706 |
ataacacaatttttctttaattgattcatgttcatgtgaa |
5021745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 14710118 - 14710078
Alignment:
| Q |
160 |
ttggaagagagcattttttgttggaagaagagcaattttct |
200 |
Q |
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| T |
14710118 |
ttggaagtgagcattttttgttgggagaagagcatttttct |
14710078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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