View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2476_high_10 (Length: 236)
Name: NF2476_high_10
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4062791 - 4063011
Alignment:
| Q |
1 |
atttctccacaatggagaacctattaggcacagggttttaaatagttaagacattaccattgtggatggtctaattgaatgtatgtagatagatccttgt |
100 |
Q |
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| T |
4062791 |
atttctctacaatggagaacctattaggtacagg-ttttaaatagttaaaaccttaccattgtggatggtctaatgggacgtatgtagatagatccttgt |
4062889 |
T |
|
| Q |
101 |
aattcagttttgtctcatgtagctgtagctgctgaacagacattccttaactgtgcaataatgaattaccaattcagctttccagattatagtcaattta |
200 |
Q |
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| T |
4062890 |
aattcaattttgtctcatgtagctgtagctgctgaacagacattccttaactgtgcaataatgaattaccaattcagctttccagattatagtcaattta |
4062989 |
T |
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| Q |
201 |
tttggtgttatcaacaaaaaag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4062990 |
tttggtgttatcaacaaaaaag |
4063011 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5834094 - 5834019
Alignment:
| Q |
1 |
atttctccacaatggaga-acctattaggcacagggttttaaatagttaagacattaccattgtggatggtctaat |
75 |
Q |
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| T |
5834094 |
atttctccacaatggaggtacctattaggtaccgggtcttaaatagttaaaaccctaccattgtggatggtctaat |
5834019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51997106 - 51997032
Alignment:
| Q |
1 |
atttctccacaatggaga-acctattaggcacagggttttaaatagttaagacattaccattgtggatggtctaa |
74 |
Q |
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| T |
51997106 |
atttctccacaatagggatacctattaggtattggatcttaaatagttaagaccctaccattgtggatggtctaa |
51997032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 41521048 - 41521119
Alignment:
| Q |
3 |
ttctccacaatg-gagaacctattaggcacagggttttaaatagttaagacattaccattgtggatggtctaa |
74 |
Q |
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|||||||||||| ||| |||||||||| || |||| |||||| |||||||| |||||| ||||||||||||| |
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| T |
41521048 |
ttctccacaatgagagtacctattaggtac-gggtcttaaatggttaagaccctaccatagtggatggtctaa |
41521119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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