View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2476_high_2 (Length: 460)
Name: NF2476_high_2
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 22 - 445
Target Start/End: Original strand, 15380210 - 15380632
Alignment:
| Q |
22 |
ctataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaaggatcaaactcccaatgaaaagaacnnnnnnnnnntgaacagtagtactaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15380210 |
ctataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaaggatcaaactcccaatgaaaagaacaaaaaaaaa-tgaacagtagtactaa |
15380308 |
T |
|
| Q |
122 |
taaaggaagnnnnnnnncttaaaataaataaggtggtggtccaagtttgtccagaaacctcaaaattttattatagaaggtttttgagtttcataattga |
221 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15380309 |
taaaggaagaaaaaaa-cttaaaataaataaggtggtggtccaagtttgtccagaaacctcaaaattttattatagaaggtttttgagtttcataattga |
15380407 |
T |
|
| Q |
222 |
cttaagagtcatggggcacattactacaatattgcatgagagttgtgagcttnnnnnnnnnnnnnnnnnnnnnnnncttgttggtgggtatagtcattca |
321 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15380408 |
ctta-gagtcatggggcacattactacaatattgcataagagttgtgagcttttattattattgttattattattacttgttggtgggtatagtcattca |
15380506 |
T |
|
| Q |
322 |
gcaatggctttgcagattccctagggaaagtgaatgagagacatgtagagagtgagaaaggg-aataatat-actccacaaagatgcaattaatggattg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15380507 |
gcaatggctttgcagattccctagggaaagtgaatgagagacatgtagagagtgagaaagggaaataatataactccacaaagatgcaattaatggattg |
15380606 |
T |
|
| Q |
420 |
gtcatgtaactggtaagtgtgaatga |
445 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
15380607 |
gtcatgtaactggtaagtgtggatga |
15380632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 26435801 - 26435751
Alignment:
| Q |
23 |
tataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaagga |
73 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
26435801 |
tataaaaagaggaaattaaatagctgtttctgggtagatgttgacaaagga |
26435751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University