View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2476_high_4 (Length: 409)

Name: NF2476_high_4
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2476_high_4
NF2476_high_4
[»] chr6 (24 HSPs)
chr6 (19-374)||(10579038-10579390)
chr6 (22-365)||(6596178-6596518)
chr6 (71-207)||(6423833-6423969)
chr6 (161-208)||(6436835-6436882)
chr6 (161-208)||(7993631-7993678)
chr6 (69-119)||(6395553-6395603)
chr6 (286-366)||(7132143-7132223)
chr6 (163-206)||(6432759-6432802)
chr6 (69-119)||(6410711-6410761)
chr6 (300-366)||(6423743-6423809)
chr6 (290-366)||(6410532-6410608)
chr6 (154-206)||(9412050-9412102)
chr6 (168-208)||(19633024-19633064)
chr6 (164-203)||(6410627-6410666)
chr6 (80-206)||(7132234-7132360)
chr6 (80-206)||(7138080-7138206)
chr6 (69-119)||(19633116-19633166)
chr6 (301-366)||(6403407-6403472)
chr6 (163-208)||(6403502-6403547)
chr6 (307-360)||(6427025-6427078)
chr6 (161-206)||(7135157-7135202)
chr6 (80-117)||(7135246-7135283)
chr6 (314-366)||(6594124-6594176)
chr6 (69-117)||(14809717-14809765)
[»] chr5 (1 HSPs)
chr5 (155-203)||(17205662-17205710)
[»] chr1 (3 HSPs)
chr1 (159-207)||(30827723-30827771)
chr1 (154-206)||(7555124-7555176)
chr1 (165-208)||(33161122-33161165)
[»] chr4 (2 HSPs)
chr4 (164-201)||(10633967-10634004)
chr4 (71-119)||(553775-553823)
[»] chr8 (1 HSPs)
chr8 (157-200)||(32151900-32151943)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 10579038 - 10579390
Alignment:
Q  19 aagttcccgtttgagaaactcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaacataacaactttga 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  10579038 aagttcccgtttgagaaactcaactcgctagctctctccggcgaaagcatctttcccacagatgggttacgagctttctcccaaaacataacaactttga 10579137  T
Q  119 catgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacctcgaactcagttg 218  Q
    || |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579138 caagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattgtttcccattgctcaaagaactcaacctcgaactcagttg 10579237  T
Q  219 ccctattctcaaaagtcaaactattttcaagaatggaggaagtcactctctgttatcaaaacgtcggttggtcaagaatcgaactgatttcattaatgga 318  Q
    ||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10579238 ccctattctcaaaagtcaaactattttcaagaat---ggaagtcaatctctgttatcaaaacgtcggttggtcaacaatcgaactgatttcattaatgga 10579334  T
Q  319 attcactctctgttatcaaagtgtccatgtattcaacatttgaatctttacaacac 374  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10579335 attcactctctgttatcaaagtgtccatgtattcaacatttgagtctttacaacac 10579390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 365
Target Start/End: Original strand, 6596178 - 6596518
Alignment:
Q  22 ttcccgtttgagaaactcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaacataacaactttgacat 121  Q
    ||||| ||| ||||||| || ||||| |  |||||||||||||||||||||||| | || ||||||| || ||||||||||||||||||||||||||| |    
T  6596178 ttcccatttaagaaacttaaatcgctcgttctctccggcgaaagcatctttcccgctgacgggttgcgagttttctcccaaaacataacaactttgacct 6596277  T
Q  122 gttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacctcgaactcagttgccc 221  Q
     | | ||||||||||   |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |  |||    
T  6596278 ctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtttcccattgctcaaagaactcaacatcgaaatcaataaccc 6596377  T
Q  222 tattctcaaaagtcaaactattttcaagaatggaggaagtcactctctgttatcaaaacgtcggttggtcaagaatcgaactgatttcattaatggaatt 321  Q
    |||| || || ||||||||| ||||||||||   |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||    
T  6596378 tattttccaatgtcaaactaatttcaagaat---ggaactcactctctgttatcaaaacgtcagttggtcaacaatcgaactgatttcattaacgaaatt 6596474  T
Q  322 cactctctgttatcaaagtgtccatgtattcaacatttgaatct 365  Q
    ||||||||||||||||| |||| || ||||||||||||||||||    
T  6596475 cactctctgttatcaaattgtcgatttattcaacatttgaatct 6596518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 6423969 - 6423833
Alignment:
Q  71 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcat 170  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| | | | ||||||| ||     || || | ||| |  ||| |||||||  |    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgt 6423870  T
Q  171 tgccgattgtttcccattgctcaaagaactcaacctc 207  Q
     ||| ||||||||||||||||||||||||||||||||    
T  6423869 ggccaattgtttcccattgctcaaagaactcaacctc 6423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 6436882 - 6436835
Alignment:
Q  161 tgttactcattgccgattgtttcccattgctcaaagaactcaacctcg 208  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6436882 tgttactcattgccgattgtttccctttgctcaaacaactcaacctcg 6436835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 7993631 - 7993678
Alignment:
Q  161 tgttactcattgccgattgtttcccattgctcaaagaactcaacctcg 208  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  7993631 tgttactcattgccaattgtttccctttgctcaaagaactcaacctcg 7993678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 6395603 - 6395553
Alignment:
Q  69 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 119  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  6395603 ctttcccacagatgggttgcaagctctctcccaaaatattacaactttgac 6395553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 7132223 - 7132143
Alignment:
Q  286 ttggtcaagaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 366  Q
    ||||| || |||| |||| | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||||||||    
T  7132223 ttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttgaatctt 7132143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 6432802 - 6432759
Alignment:
Q  163 ttactcattgccgattgtttcccattgctcaaagaactcaacct 206  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  6432802 ttactcattgccgattgtttccctttgctcaaacaactcaacct 6432759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 6410761 - 6410711
Alignment:
Q  69 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 119  Q
    |||||||| | |||||||||||| ||||||||||||||| |||||||||||    
T  6410761 ctttcccataaatgggttgcaagttttctcccaaaacattacaactttgac 6410711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 6423809 - 6423743
Alignment:
Q  300 aactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 366  Q
    |||| |||||||||||||||||| |  | ||||||| ||||||| |||||| |||||||||||||||    
T  6423809 aactaatttcattaatggaattcgcaatttgttatccaagtgtcaatgtatacaacatttgaatctt 6423743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 6410608 - 6410532
Alignment:
Q  290 tcaagaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 366  Q
    ||||| ||||| || ||||||||||||||||||||| ||||||||| ||||| | |||| | |||||| || |||||    
T  6410608 tcaagtatcgatctaatttcattaatggaattcactatctgttatccaagtgccaatgtttacaacatatggatctt 6410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 9412102 - 9412050
Alignment:
Q  154 aatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacct 206  Q
    |||||||||||||||||||| || |||||||| |||||  |||||||||||||    
T  9412102 aatgacttgttactcattgctgaatgtttccctttgcttgaagaactcaacct 9412050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 19633064 - 19633024
Alignment:
Q  168 cattgccgattgtttcccattgctcaaagaactcaacctcg 208  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  19633064 cattgccgattgtttcccattgttgaaagaactcaacctcg 19633024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 6410666 - 6410627
Alignment:
Q  164 tactcattgccgattgtttcccattgctcaaagaactcaa 203  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  6410666 tactctttgctgattgtttcccattgctcaaagaactcaa 6410627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 7132360 - 7132234
Alignment:
Q  80 atgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattg 179  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| | |   |||||| |     || || ||||| || ||  ||||||| |||||||||||    
T  7132360 atgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccgattg 7132261  T
Q  180 tttcccattgctcaaagaactcaacct 206  Q
    ||| ||| |||| ||||||||||||||    
T  7132260 ttttccaatgcttaaagaactcaacct 7132234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 7138206 - 7138080
Alignment:
Q  80 atgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattg 179  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| | |   |||||| |     || || ||||| || ||  ||||||| |||||||||||    
T  7138206 atgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattg 7138107  T
Q  180 tttcccattgctcaaagaactcaacct 206  Q
    ||| ||| |||| ||||||||||||||    
T  7138106 ttttccaatgcttaaagaactcaacct 7138080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 19633166 - 19633116
Alignment:
Q  69 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 119  Q
    |||||||||| ||||||||| |||||||||| ||| ||| |||||||||||    
T  19633166 ctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgac 19633116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 6403472 - 6403407
Alignment:
Q  301 actgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 366  Q
    ||||| || |||||||||||  ||||||||||||| ||||||  |||||| ||||||||| |||||    
T  6403472 actgactttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatctt 6403407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 6403547 - 6403502
Alignment:
Q  163 ttactcattgccgattgtttcccattgctcaaagaactcaacctcg 208  Q
    |||||||||||||||||||||||   ||||||| ||||||||||||    
T  6403547 ttactcattgccgattgtttccctaagctcaaacaactcaacctcg 6403502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 6427078 - 6427025
Alignment:
Q  307 ttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 360  Q
    |||||||||  |||||||| | ||||||| |||||||||||||| |||||||||    
T  6427078 ttcattaattcaattcactgtatgttatccaagtgtccatgtatacaacatttg 6427025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 7135202 - 7135157
Alignment:
Q  161 tgttactcattgccgattgtttcccattgctcaaagaactcaacct 206  Q
    ||||||| |||||||||||||| ||| ||| |||||||||||||||    
T  7135202 tgttacttattgccgattgttttccaatgcacaaagaactcaacct 7135157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 7135283 - 7135246
Alignment:
Q  80 atgggttgcaagctttctcccaaaacataacaactttg 117  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7135283 atgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 6594124 - 6594176
Alignment:
Q  314 atggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 366  Q
    |||||||  ||||| ||||||| ||||||| |||||| |||||||||||||||    
T  6594124 atggaatgtactctttgttatccaagtgtcgatgtatacaacatttgaatctt 6594176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 14809765 - 14809717
Alignment:
Q  69 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttg 117  Q
    ||||||| || | |||||||||| ||||||||||||||| |||||||||    
T  14809765 ctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttg 14809717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 17205710 - 17205662
Alignment:
Q  155 atgacttgttactcattgccgattgtttcccattgctcaaagaactcaa 203  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  17205710 atgacctgttactcattgccgattgtttccctttgctcaaagaactcaa 17205662  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 30827771 - 30827723
Alignment:
Q  159 cttgttactcattgccgattgtttcccattgctcaaagaactcaacctc 207  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  30827771 cttgttactcattgccgattgtttccctttgctcaaacaactcaacctc 30827723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 7555176 - 7555124
Alignment:
Q  154 aatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacct 206  Q
    |||||||||||||||||||| || |||||||| |||||| |||||||||||||    
T  7555176 aatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 7555124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 33161165 - 33161122
Alignment:
Q  165 actcattgccgattgtttcccattgctcaaagaactcaacctcg 208  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||    
T  33161165 actcgttgccgattgtttccctttgctcaaaaaactcaacctcg 33161122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 10633967 - 10634004
Alignment:
Q  164 tactcattgccgattgtttcccattgctcaaagaactc 201  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10633967 tactcattgccgattgtttccctttgctcaaagaactc 10634004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 553823 - 553775
Alignment:
Q  71 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 119  Q
    ||||| || ||||||||| |||||||||||||||||| |||||||||||    
T  553823 ttcccgcaaatgggttgcgagctttctcccaaaacattacaactttgac 553775  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 32151943 - 32151900
Alignment:
Q  157 gacttgttactcattgccgattgtttcccattgctcaaagaact 200  Q
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T  32151943 gacttgttcctcattgccgattgtttccctttgctcgaagaact 32151900  T

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