View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2476_high_5 (Length: 388)
Name: NF2476_high_5
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_high_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 203 - 388
Target Start/End: Complemental strand, 9364891 - 9364709
Alignment:
| Q |
203 |
taaataattaaatgtaatcatatgtgtcagttttgggtcgaggtcgaacaccgaagagactttcaatctgaaatatacatactatgtaactttgaagtca |
302 |
Q |
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| T |
9364891 |
taaataattaattgtaatcatatgtgtcaattttttgtctaagtcgaacaccagacacacttttaatctaaaatgtatgcactatgtaaatttgaagtca |
9364792 |
T |
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| Q |
303 |
atgcacatatttgtagtacacaacaataatattttcccttaatggcaggtggtgaatgggatagaagcagtgaagttttttcattt |
388 |
Q |
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| T |
9364791 |
atgcacatacttataatacataacaata---ttttgccttaatggcaggtggtgaatgggatagaagcagtgaagttttttcattt |
9364709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 9365088 - 9364966
Alignment:
| Q |
17 |
tcaacactccaaataaaatggatttgaattccctaaaaacctactgatgtcattgtccattttcatggttagatagagatcggatgtctcttatcattaa |
116 |
Q |
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| T |
9365088 |
tcaacactacaaataaaatggatttggattccctaaacacccactaatgtggttgtccatcttcacggttagatagagatcggatgtctcttatcatgaa |
9364989 |
T |
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| Q |
117 |
tttgggaaatcaaaactcaaaat |
139 |
Q |
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| T |
9364988 |
tttgagaaattaaaactcaaaat |
9364966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 9400264 - 9400195
Alignment:
| Q |
319 |
tacacaacaataatattttcccttaatggcaggtggtgaatgggatagaagcagtgaagttttttcattt |
388 |
Q |
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| T |
9400264 |
tacaaaacactaatattttcctttaatgacaggtggtgaatgggatagaagcagtgaagttttttcattt |
9400195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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