View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2476_high_6 (Length: 380)
Name: NF2476_high_6
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 40508068 - 40507707
Alignment:
| Q |
1 |
tgacttgtgtcatagaagaaacctttaaaccagaagatgcacaaacttcaagagcattaatagacctgtactccatcccaaagactctttgaataccatc |
100 |
Q |
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| T |
40508068 |
tgacttgtggcatagaagaaacctttaaaccagaagatgcacaaacttcaagagcattaatagacctgtactccatcccaaagactctttgaataccatc |
40507969 |
T |
|
| Q |
101 |
agtcattgacaacttcaggcaccttttacgtgttggaggagcttgttgatatctgcttcgcagaggacaacagagattgacaatttcatcaacctgccaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40507968 |
agtcattgacaacttcaggcaccttttacgcgttggaggagcttgttgatatctgcttcgcagaggacaacagagattgacaatttcatcaacctgccaa |
40507869 |
T |
|
| Q |
201 |
cgcgttaaggtataaagtctacaggtaccacatatgaaatcgatcgcaattaatgacatgcacgtagaaaatatacatcagcaaccatctaagcaaaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40507868 |
cgcgttaaggtataaagtctacaggtaccacatatgaaatcgatcgcaattaatgacacgcacgtagaaaatatacatcagcaaccatctaagcaaaaaa |
40507769 |
T |
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| Q |
301 |
tacttaacccactgtccatcacataggagcataatttggatcctagcaacccaagatactat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40507768 |
tacttaacccactgtccatcacataggagcataatttggatcctagcaacccaagatactat |
40507707 |
T |
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