View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2476_low_1 (Length: 462)
Name: NF2476_low_1
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 9364224 - 9364660
Alignment:
| Q |
18 |
gaacctgtgaatgcaactctatataagtcacagacttggattatggagctgctaagaaaattctaaaatacatcaaaggcacggttgattatggagtgtt |
117 |
Q |
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| T |
9364224 |
gaacctgtgaatgcaactctatataagtcacagacttggattatggagctgctaagaaaattctaaaatacatcaaaggcacggttgattatggagtgtt |
9364323 |
T |
|
| Q |
118 |
tgatgcctagctagagaaacaaatgttgattatgtaatttaaatttgcatcatgatgaaatcaacttcttctcccttttagttgatctagcatcaaacaa |
217 |
Q |
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| T |
9364324 |
tgatgcctagctagagaaacaaatgttgattatgtaatttaaatttgcatcatgatgaaatcaacttcttcgcccttttagttgatctagcatcaaacaa |
9364423 |
T |
|
| Q |
218 |
atgttgcaataccgaaatattttctaaattttgcaacacatccctcattgaaggacgatttgctggaaaaaattctatgcactgcaaagcaagtcgagtt |
317 |
Q |
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| T |
9364424 |
atgttgcaataccgaaatattttctaaattttgcaacacatccttcattgaaggacgatttgctggaaaaaattctatgcactgcaaagcaagtcgagtt |
9364523 |
T |
|
| Q |
318 |
attgcaacaccatcttcagcacaataaagccaatcttcttgcagatgtttgtgaacaagagagcaatttggtttatactcattcttagcccaaatgtgta |
417 |
Q |
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| T |
9364524 |
attgcaacaccatcttcagcacaataaagccaatcttcttgcagatatttatgaacaagagagcaatttggtttatactcattcttagcccaaatgtgta |
9364623 |
T |
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| Q |
418 |
ctagattatccatgtttaagcttgtatcttctgtgtt |
454 |
Q |
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| T |
9364624 |
ctagattatccatgtttaagcttgtatcttctgtgtt |
9364660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 150 - 454
Target Start/End: Original strand, 9399842 - 9400146
Alignment:
| Q |
150 |
tgtaatttaaatttgcatcatgatgaaatcaacttcttctcccttttagttgatctagcatcaaacaaatgttgcaataccgaaatattttctaaatttt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||| |
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| T |
9399842 |
tgtaatttaaatttgcatcatgatgaaatcaacttcttctcccttttagttgatctagcatcaaacacatgttgcaacacggaaagcttttctaaatttt |
9399941 |
T |
|
| Q |
250 |
gcaacacatccctcattgaaggacgatttgctggaaaaaattctatgcactgcaaagcaagtcgagttattgcaacaccatcttcagcacaataaagcca |
349 |
Q |
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| T |
9399942 |
gcaacacatccctcattgaaggacgatttgctggaaaaaattctatgcactgcaaagcaagtcgagttattgcaacaccatcttcagcacaataaagcca |
9400041 |
T |
|
| Q |
350 |
atcttcttgcagatgtttgtgaacaagagagcaatttggtttatactcattcttagcccaaatgtgtactagattatccatgtttaagcttgtatcttct |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400042 |
atcttcttgcagatgtttgtgaacaagagagcaatttggtttatacacattcttagcccaaatgtgtactagattatccatgtttaagcttgtatcttct |
9400141 |
T |
|
| Q |
450 |
gtgtt |
454 |
Q |
| |
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||||| |
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|
| T |
9400142 |
gtgtt |
9400146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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