View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2476_low_12 (Length: 204)
Name: NF2476_low_12
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 1e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 30050795 - 30050929
Alignment:
| Q |
1 |
cagtcttcaatcttaacccttgaattatttaacattaaatcaatggttaagtatatggtacataaaaagattctggctgatgttgcatttaagtttgata |
100 |
Q |
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| T |
30050795 |
cagtcttcaatcttaacccttgaattatttaacattaaatcaatggttaagtatatggtacataaaaagattctggctgatgttgcatttaagtttgata |
30050894 |
T |
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| Q |
101 |
cacaaattctatgatttatgtatgctaaatgccaa |
135 |
Q |
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| T |
30050895 |
cacaaattctatgatttatgtatgctaaatgccaa |
30050929 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 30050982 - 30051035
Alignment:
| Q |
132 |
ccaagctaaacgtaacacagctggggagttttggttatttgtttgcttactgct |
185 |
Q |
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| T |
30050982 |
ccaagctaaacgtaacacagctggagagttttggttatttgtttgcttactgct |
30051035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 40863452 - 40863498
Alignment:
| Q |
4 |
tcttcaatcttaacccttgaattatttaacattaaatcaatggttaa |
50 |
Q |
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| T |
40863452 |
tcttcaatcttgaccattgaattatttaatattatatcaatggttaa |
40863498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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