View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2476_low_3 (Length: 454)

Name: NF2476_low_3
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2476_low_3
NF2476_low_3
[»] chr2 (9 HSPs)
chr2 (3-440)||(4062272-4062708)
chr2 (303-440)||(7772792-7772929)
chr2 (303-440)||(448808-448945)
chr2 (303-386)||(11511918-11512001)
chr2 (303-386)||(11915975-11916058)
chr2 (303-386)||(39445895-39445978)
chr2 (303-385)||(20683389-20683471)
chr2 (301-361)||(9043057-9043117)
chr2 (228-272)||(32414676-32414720)
[»] chr7 (11 HSPs)
chr7 (303-440)||(5532759-5532896)
chr7 (303-440)||(22074246-22074383)
chr7 (303-440)||(36655672-36655809)
chr7 (303-386)||(25795821-25795904)
chr7 (303-386)||(37503923-37504006)
chr7 (303-386)||(17603814-17603897)
chr7 (227-374)||(33882104-33882251)
chr7 (303-386)||(42710485-42710568)
chr7 (303-386)||(958007-958090)
chr7 (303-364)||(46209014-46209075)
chr7 (303-343)||(33987837-33987877)
[»] chr4 (18 HSPs)
chr4 (303-440)||(51997189-51997326)
chr4 (303-440)||(51676817-51676953)
chr4 (303-386)||(40946186-40946269)
chr4 (303-384)||(40047017-40047098)
chr4 (302-413)||(5834167-5834278)
chr4 (303-384)||(45064219-45064299)
chr4 (304-384)||(45047120-45047200)
chr4 (303-386)||(25479754-25479837)
chr4 (303-386)||(29627924-29628007)
chr4 (327-386)||(32212712-32212771)
chr4 (307-386)||(6076687-6076766)
chr4 (303-386)||(8757434-8757517)
chr4 (303-386)||(55970222-55970305)
chr4 (303-364)||(37247205-37247266)
chr4 (227-287)||(6077828-6077888)
chr4 (303-386)||(6077911-6077992)
chr4 (303-359)||(22425015-22425071)
chr4 (404-440)||(55970147-55970183)
[»] chr5 (13 HSPs)
chr5 (302-440)||(13905958-13906096)
chr5 (303-440)||(5495612-5495749)
chr5 (303-440)||(2552428-2552565)
chr5 (226-386)||(38037406-38037565)
chr5 (299-384)||(33207491-33207576)
chr5 (303-364)||(37194313-37194374)
chr5 (226-386)||(13417181-13417340)
chr5 (303-386)||(30471779-30471862)
chr5 (227-348)||(5367782-5367904)
chr5 (303-384)||(39324071-39324152)
chr5 (303-361)||(33494726-33494783)
chr5 (303-384)||(4277396-4277477)
chr5 (303-364)||(8433746-8433807)
[»] chr3 (10 HSPs)
chr3 (303-384)||(52669751-52669832)
chr3 (303-435)||(52119981-52120113)
chr3 (303-386)||(48457955-48458038)
chr3 (303-384)||(4489501-4489582)
chr3 (303-384)||(22909415-22909496)
chr3 (303-360)||(45707704-45707761)
chr3 (303-387)||(50596143-50596227)
chr3 (303-348)||(21079993-21080038)
chr3 (320-386)||(39096037-39096103)
chr3 (299-348)||(53143621-53143670)
[»] chr1 (25 HSPs)
chr1 (303-386)||(32913900-32913983)
chr1 (303-386)||(15457041-15457124)
chr1 (303-384)||(44573874-44573955)
chr1 (303-385)||(3582746-3582828)
chr1 (303-384)||(14395979-14396060)
chr1 (303-384)||(31636508-31636589)
chr1 (303-382)||(50270776-50270855)
chr1 (303-386)||(51244085-51244168)
chr1 (304-384)||(23625145-23625225)
chr1 (303-386)||(42489034-42489116)
chr1 (303-384)||(4448006-4448088)
chr1 (299-353)||(31206329-31206383)
chr1 (303-385)||(33259434-33259516)
chr1 (303-385)||(33279593-33279675)
chr1 (251-386)||(33603395-33603527)
chr1 (303-361)||(45467660-45467718)
chr1 (303-343)||(1774983-1775023)
chr1 (299-343)||(6704179-6704223)
chr1 (303-379)||(44240435-44240511)
chr1 (303-386)||(7789753-7789836)
chr1 (303-386)||(35615473-35615556)
chr1 (303-386)||(43177841-43177924)
chr1 (303-364)||(5300473-5300534)
chr1 (299-386)||(5040953-5041041)
chr1 (303-343)||(14884686-14884726)
[»] chr8 (16 HSPs)
chr8 (303-365)||(30905557-30905619)
chr8 (357-437)||(44104140-44104219)
chr8 (303-386)||(41123313-41123396)
chr8 (303-384)||(37187553-37187635)
chr8 (303-384)||(14581202-14581283)
chr8 (303-384)||(17793309-17793390)
chr8 (303-386)||(26705772-26705855)
chr8 (303-348)||(7573094-7573139)
chr8 (303-364)||(14728916-14728977)
chr8 (303-384)||(38901229-38901309)
chr8 (307-386)||(24848946-24849025)
chr8 (303-386)||(32953198-32953281)
chr8 (406-440)||(30905618-30905652)
chr8 (303-364)||(7176694-7176755)
chr8 (303-364)||(10288095-10288156)
chr8 (381-431)||(24845762-24845814)
[»] chr6 (5 HSPs)
chr6 (303-386)||(11703169-11703252)
chr6 (303-384)||(6793901-6793982)
chr6 (302-386)||(4405690-4405774)
chr6 (303-364)||(378629-378690)
chr6 (303-386)||(30250359-30250442)
[»] scaffold0110 (1 HSPs)
scaffold0110 (303-384)||(26736-26817)
[»] scaffold1114 (1 HSPs)
scaffold1114 (304-384)||(2343-2423)
[»] scaffold0092 (1 HSPs)
scaffold0092 (305-386)||(4817-4898)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 3 - 440
Target Start/End: Original strand, 4062272 - 4062708
Alignment:
Q  3 tcgagtgagatgaaatttagttgcaatttctttatgataatggacggatctataatttcaatccccgccataataatgctttgatatcatgatacacgtg 102  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4062272 tcgaatgacatgaaatttagttgcaatttctttatgataatggacggatctataatttcaatcctcgccataataatgctttgatatcatgatacacgtg 4062371  T
Q  103 atcaaccattgcattgtacaatatacattattgttatta-tttgtcttgaaatgaaaagtaggagaggggaccattctttgttttccataacccaacggc 201  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4062372 atcaaccattgcattgtacaatatacattattgttattattttgtcttgaaatgaaaagtaggagaggggaccattctttgttttacataacccaacggc 4062471  T
Q  202 ccaatgatttcaaaatttgtgtgcaagagcatccataatgaagatccttaattttgaggtcttaaacggattttacatagacacatcacnnnnnnnnata 301  Q
    ||| ||||||||||| ||||||  |||||| |  |||| ||||| ||| |||||||||||||||||||||||| |||| ||||||||||        | |    
T  4062472 ccattgatttcaaaagttgtgtataagagcgtttataacgaagaccctcaattttgaggtcttaaacggatttcacatggacacatcacttttttata-a 4062570  T
Q  302 atttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaagg 401  Q
     |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||     
T  4062571 ttttttaataatagtatataataggtactcaacaactacaatggagaacctccaacaaaaggtctatatgggtcccaccaataacattaaaaaatcaaga 4062670  T
Q  402 taaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  4062671 taaattgcaattgaaaaacaata-tacaatgacattgat 4062708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 7772792 - 7772929
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| |||||||||||||  |||||||||||||||  ||| |    
T  7772792 tttttaataatagtatctaataggtactcaacaactgcaatggagactctccaacaaaaggtctatatgggtcccaagaataacattaaaaaaccaagat 7772891  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||| ||||| |||||||||||||||||  |||||||    
T  7772892 aaattacaattgaaaaacaatagtacaatatcattgat 7772929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 448808 - 448945
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||  ||| ||||||| || ||| ||||| ||||||||||||||||||| | || ||    
T  448808 tttttaataatagtatctaataggtactcaaacacttcaatagagactctctaacaaaatgtctatgtgggttccaccaataacattaaaaagtcaaagt 448907  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||| ||||| |||| |||  ||||||||||| ||||    
T  448908 aaatttcaattgaaaagcaacggtacaatgacaatgat 448945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 11511918 - 11512001
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||| |||| | |||||||| || ||||||||||| ||||||    
T  11511918 tttttaataatagtacctaataggtactcaaccactccaatagagatcctctatcaaaaggtctaaatgggtcccacaaataac 11512001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 11916058 - 11915975
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||||||||||||| ||| |||| |||| |||| |||||||||| ||||||||| ||||| |||||    
T  11916058 tttttaataatagtacctaataggtactcaaccactccaatggagaccctctaacaaaaggtctatatgggttccaccgataac 11915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 39445978 - 39445895
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| |||||| |||||||||| ||||| ||| ||||||||| |||||||||||||||||| |||||  |||||||||||    
T  39445978 tttttaatgatagtacctaataggtattcaaccactccaatagagaccctccaacaaaaggtttaaatgggatccaccaataac 39445895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 20683471 - 20683389
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataa 385  Q
    ||||||||||||||| |||||||||||||||  ||| |||| |||| |||| | |||||  | || |||||||||||||||||    
T  20683471 tttttaataatagtacctaataggtactcaatcactccaatggagatcctctatcaaaatatataaatgggtcccaccaataa 20683389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 9043057 - 9043117
Alignment:
Q  301 aatttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaa 361  Q
    ||||||||||||||||||||||| ||||| |||| |||  |||||||| |||| |||||||    
T  9043057 aatttttaataatagtatctaattggtacccaaccactttaatagagatcctctaacaaaa 9043117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 32414720 - 32414676
Alignment:
Q  228 gagcatccataatgaagatccttaattttgaggtcttaaacggat 272  Q
    ||||||||| |||| ||||||| || |||||||||||||||||||    
T  32414720 gagcatccacaatggagatcctcaaatttgaggtcttaaacggat 32414676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 5532759 - 5532896
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| || || || |||||||||||||||||||||| |||||    
T  5532759 tttttaataatagtatctaataggtactcaaccactacaatggagatcctccaacaaaaggtctaaataggacccaccaataacattaaaaaatcaaggt 5532858  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  5532859 aaattgcaattgaaaagcaatagtacaatgacattgat 5532896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 440
Target Start/End: Complemental strand, 22074383 - 22074246
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    |||||||||||||||  |||||| |||||||| ||| |||| || | |||  |||||||||| |||||||||||||||||||||||||||||   |||||    
T  22074383 tttttaataatagtacataatagatactcaaccactccaatggaaaccctataacaaaaggtctatatgggtcccaccaataacattaaaaagccaaggt 22074284  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||||||||| |||| |||||||||||||||| ||||    
T  22074283 aaattgcaattaaaaagcaatagtacaatgacaatgat 22074246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 440
Target Start/End: Complemental strand, 36655809 - 36655672
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    ||||||||||||||| ||||  |||||||||| |||| ||  |||| |||||||||||| || || || || |||||||||||||||||||||| |||||    
T  36655809 tttttaataatagtacctaactggtactcaaccactaaaacggagatcctccaacaaaatgtctaaataggacccaccaataacattaaaaaatcaaggt 36655710  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||| ||||| |||| |||||||||||||||||||||    
T  36655709 aaattacaattgaaaagcaatagtacaatgacattgat 36655672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 25795821 - 25795904
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| |||||| |||||||||||||||| ||| ||||||||| |||| |||||||||| || ||||  ||||||||||||    
T  25795821 tttttaatgatagtacctaataggtactcaaccactccaatagagatcctctaacaaaaggtctaaatggaacccaccaataac 25795904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 37504006 - 37503923
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||| |||||| ||||| || || |||||||| || ||||||    
T  37504006 tttttaataatagtatctaataggtactcaaccactccaatggagatcctccatcaaaaagtctaaatgggtccaactaataac 37503923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 17603814 - 17603897
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| |||||  |||||||||||||||| ||| ||||||| | |||| | |||||| |||| ||||| ||||||||||||    
T  17603814 tttttaatgatagtgactaataggtactcaaccactccaatagataccctctagcaaaagatttaaatgggacccaccaataac 17603897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 33882251 - 33882104
Alignment:
Q  227 agagcatccataatgaagatccttaattttgaggtcttaaacggattttacatagacacatcacnnnnnnnnataatttttaataatagtatctaatagg 326  Q
    ||||||||||||||| | | ||| |  |||||||||||||||||||   |||| ||||||||||         || ||||||||||||||| ||||||||    
T  33882251 agagcatccataatggaaaccctcacatttgaggtcttaaacggatcccacatggacacatcactttttttattattttttaataatagtacctaatagg 33882152  T
Q  327 tactcaacaactacaatagagaacctccaacaaaaggtttatatgggt 374  Q
    |||||||| ||| |||| |||| |||| | ||||| || || ||||||    
T  33882151 tactcaaccacttcaatggagatcctctatcaaaaagtctaaatgggt 33882104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 42710485 - 42710568
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||||||| ||||||||| ||||  ||| ||||||||| |||| |||||||||| || ||| | || |||||||||    
T  42710485 tttttaataatagtatttaataggtattcaatcacttcaatagagaccctctaacaaaaggtctaaatgagaccaaccaataac 42710568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 958007 - 958090
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||  ||| |||| | |||||||| || ||| ||| ||||||||||    
T  958007 tttttaataatagtacctaataggtacttaaccactccaatgaagatcctctatcaaaaggtctaaatgagtctcaccaataac 958090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 46209014 - 46209075
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    |||||||||||| ||| |||||||||| |||| ||| |||| |||| |||| ||||||||||    
T  46209014 tttttaataataatatttaataggtacccaaccactccaatggagatcctctaacaaaaggt 46209075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 33987877 - 33987837
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaat 343  Q
    |||||||||||||||| ||||||||||||||| ||| ||||    
T  33987877 tttttaataatagtatttaataggtactcaaccacttcaat 33987837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 303 - 440
Target Start/End: Complemental strand, 51997326 - 51997189
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||| ||| ||||||||||| || || || |||||||||||||||||||||  |||||    
T  51997326 tttttaataatagtacctaataggtactcaaccactacaatggagatccttcaacaaaaggtctaaataggacccaccaataacattaaaaaaccaaggt 51997227  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  51997226 aaattgcaattgaaaagcaatagtacaatgacattgat 51997189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 440
Target Start/End: Complemental strand, 51676953 - 51676817
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    ||||||||||||| | |||||||||||||||| |||||||| |||| ||||||||||||||| || ||  | ||||||||||| |||||||||  |||||    
T  51676953 tttttaataatagaacctaataggtactcaaccactacaatggagatcctccaacaaaaggtctaaataagacccaccaataa-attaaaaaaccaaggt 51676855  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||||||||| |||| ||||| |||||||||||||||    
T  51676854 aaattgcaattgaaaagcaataatacaatgacattgat 51676817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 40946186 - 40946269
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||| |||  |||||||||||||||||  |||||||||||||    
T  40946186 tttttaataatagcatctaataggtactcaaccactccaatagagaccctttaacaaaaggtttatatgaatcccaccaataac 40946269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 40047098 - 40047017
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| ||||||| |||||||| ||| ||||||||| |||| ||||||| |||||  |||||||||||||||    
T  40047098 tttttaataatagtacctaatagatactcaaccacttcaatagagaccctctaacaaaaagtttaattgggtcccaccaata 40047017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 5834278 - 5834167
Alignment:
Q  302 atttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaagg 401  Q
    |||||| |||||||||  ||||||||||||||  ||| ||||  ||| |  ||||||| ||||||| || || |||||||||||||||||||||  ||||    
T  5834278 attttttataatagtacataataggtactcaatcactgcaatgaagatctcccaacaataggtttaaataggacccaccaataacattaaaaaaccaagg 5834179  T
Q  402 taaattgcaatt 413  Q
    ||||||||||||    
T  5834178 taaattgcaatt 5834167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 45064299 - 45064219
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||||| | ||| |||| |||| |||| |||||||||| ||  |||||||||||||||    
T  45064299 tttttaataatagtacctaataggtactcagccact-caatggagatcctctaacaaaaggtctaattgggtcccaccaata 45064219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 45047120 - 45047200
Alignment:
Q  304 ttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||| |||||| |||||||||||||||| |||  |||||||| |||| ||||||| ||||| ||| | ||||||||||    
T  45047120 ttttaatgatagtacctaataggtactcaaccactcaaatagagaccctctaacaaaatgtttaaatgagacccaccaata 45047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 25479837 - 25479754
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||| | || ||||||| || || |||  |||| ||||||||    
T  25479837 tttttaataatagtatctaataagtactcaaccacttcaatagagatcttctaacaaaatgtataaatgactccctccaataac 25479754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 29627924 - 29628007
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| ||||||||||||||||||||||| ||| ||||  ||| |||| | ||||| || || || |||||||||||||||    
T  29627924 tttttaatcatagtatctaataggtactcaaccactccaatgaagatcctctatcaaaatgtctaaataggtcccaccaataac 29628007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 32212712 - 32212771
Alignment:
Q  327 tactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| ||| ||||||||| |||| |||||||||| || ||||||||||||||||||    
T  32212712 tactcaaccactccaatagagaccctctaacaaaaggtctaaatgggtcccaccaataac 32212771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 6076687 - 6076766
Alignment:
Q  307 taataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||| ||||||||||||||   ||| ||||||||| | || ||||||| || || ||||||||||||| ||||    
T  6076687 taataatagtacctaataggtactcagtcactccaatagagatcttctaacaaaaagtctaaatgggtcccaccactaac 6076766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 8757517 - 8757434
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||||||| ||||||||||||||| | | ||||||||| |||| | ||||| || || |||| || || |||||||    
T  8757517 tttttaataatagtatttaataggtactcaaccattccaatagagatcctctaccaaaatgtctaaatggatcacatcaataac 8757434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 55970305 - 55970222
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||||||  |||||||||  |||| |||  |||||||| ||| |||||||| || |||||| ||| ||||||||||    
T  55970305 tttttaataatagtacataataggtatgcaaccactctaatagagaccctgcaacaaaaagtctatatgagtctcaccaataac 55970222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 37247205 - 37247266
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    ||||||||||||| || ||||||||||||||| ||| |||| |||| |||  ||||||||||    
T  37247205 tttttaataatagcatttaataggtactcaaccactccaatggagatcctttaacaaaaggt 37247266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 6077828 - 6077888
Alignment:
Q  227 agagcatccataatgaagatccttaattttgaggtcttaaacggattttacatagacacat 287  Q
    |||||||||| |||| ||| ||| ||| |||||||||||||||||||  |||| |||||||    
T  6077828 agagcatccacaatggagaccctcaatcttgaggtcttaaacggattccacatggacacat 6077888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 6077911 - 6077992
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||  ||||||||| ||| ||||||||| | |  |||||||  |||| ||| ||||||||||||||    
T  6077911 tttttaataatagtacctaat--gtactcaaccactccaatagagatcatataacaaaatatttaaatgagtcccaccaataac 6077992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 22425015 - 22425071
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaa 359  Q
    ||||||||||||||| |||||||||||||||| ||| ||| | ||| |||| |||||    
T  22425015 tttttaataatagtacctaataggtactcaaccactccaacacagaccctctaacaa 22425071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 55970183 - 55970147
Alignment:
Q  404 aattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  55970183 aattgcaattgaaaaacaatagtacaatgacaatgat 55970147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 13905958 - 13906096
Alignment:
Q  302 atttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaagg 401  Q
    ||||||||||||||||| ||||||||||||||| ||||| |   ||| ||||||||||||||| || || || ||||||| ||| |||||||||| ||||    
T  13905958 atttttaataatagtatttaataggtactcaaccactacgacgaagatcctccaacaaaaggtctaaataggacccaccagtaaaattaaaaaatcaagg 13906057  T
Q  402 taaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  13906058 taaattgcaattgaaaaacaatagtacaatgacattgat 13906096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 5495612 - 5495749
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    ||||||||||||||| |||||||| ||||||| ||||| || || | | ||||||||||| | || || || |||||||||||||||||||||  |||||    
T  5495612 tttttaataatagtacctaataggcactcaactactacgatggatatcttccaacaaaagatctaaataggacccaccaataacattaaaaaacaaaggt 5495711  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5495712 aaattgcaattgaaaaacaatagtacaatgacattgat 5495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 303 - 440
Target Start/End: Complemental strand, 2552565 - 2552428
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    ||||||||||||| | ||||||| |||||||| |||||||| || | |||| ||||||| || ||||||||| ||||||||||||||||||||| |||||    
T  2552565 tttttaataatagcacctaatagatactcaaccactacaatggataccctctaacaaaatgtctatatgggttccaccaataacattaaaaaatcaaggt 2552466  T
Q  403 aaattgcaattcaaaaacaatagtacaatgacattgat 440  Q
    ||||||  ||| | ||||||||||||||| ||| ||||    
T  2552465 aaattgtcattgataaacaatagtacaatcacaatgat 2552428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 226 - 386
Target Start/End: Complemental strand, 38037565 - 38037406
Alignment:
Q  226 aagagcatccataatgaagatccttaattttgaggtcttaaacggattttacatagacacatcacnnnnnnnnataattttt-aataatagtatctaata 324  Q
    |||||||| |||||||||||  || ||| |||||||||||||||||| | ||||||||| ||||         ||||||||| ||||||| |||||||||    
T  38037565 aagagcattcataatgaagacactcaatcttgaggtcttaaacggatctcacatagacatatca--tttttttataattttttaataataatatctaata 38037468  T
Q  325 ggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||  ||| |||||||||| ||| ||||||| ||||| |||||| |||||||||||    
T  38037467 ggtactcaatcactccaatagagaatctctaacaaaaagtttaaatgggttccaccaataac 38037406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 384
Target Start/End: Original strand, 33207491 - 33207576
Alignment:
Q  299 ataatttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||||||||  ||||||||||||||| ||| |||| |||| |||| |||||||||| ||  |||||||||||||||    
T  33207491 ataatttttaataatagtacttaataggtactcaaccactccaatggagaccctctaacaaaaggtctaattgggtcccaccaata 33207576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 37194374 - 37194313
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||| |||| ||||||||||    
T  37194374 tttttaataatagtacctaataggtactcaaccactccaatagagaccctctaacaaaaggt 37194313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 386
Target Start/End: Original strand, 13417181 - 13417340
Alignment:
Q  226 aagagcatccataatgaagatccttaattttgaggtcttaaacggattttacatagacacatcacnnnnnnnnataatttttaataatagtatctaatag 325  Q
    ||||||||| | |||| ||||||| |  ||||||||||||||||| ||  |||| ||||||||||         || ||||||| ||||||| |||||||    
T  13417181 aagagcatctacaatggagatcctcacatttgaggtcttaaacgggttccacatggacacatcacttttttat-tattttttaacaatagtacctaatag 13417279  T
Q  326 gtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||| ||| ||||||||| | || | |||||||| || || |||||||||||||||    
T  13417280 gtactcaaccactccaatagagatcatctatcaaaaggtctaaataggtcccaccaataac 13417340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 30471862 - 30471779
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| |||||| |||||||||||||||| ||| ||| |||||  ||| |||||||||| || ||||| ||||||||||||    
T  30471862 tttttaatgatagtacctaataggtactcaaccactccaacagagacgctctaacaaaaggtctaaatgggacccaccaataac 30471779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 5367904 - 5367782
Alignment:
Q  227 agagcatccataatgaagatccttaattttgaggtcttaaacggattttacatagacacatcacnnnnnnnnataa-tttttaataatagtatctaatag 325  Q
    |||||||| |||||| ||| | | ||| ||||||| ||||||||||||||||| ||||||||||        |||| |||||||||||||||  ||||||    
T  5367904 agagcatctataatggagaccatcaatcttgaggttttaaacggattttacattgacacatcacttttttttataattttttaataatagtacataatag 5367805  T
Q  326 gtactcaacaactacaatagaga 348  Q
    ||| | ||| ||| |||||||||    
T  5367804 gtagttaaccactccaatagaga 5367782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 39324071 - 39324152
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||||  ||||||||||||||| ||| |||| |||| |||  |||||||||| ||  ||| |||||||||||    
T  39324071 tttttaataatagtacttaataggtactcaaccactccaatggagaccctataacaaaaggtctaattggatcccaccaata 39324152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 33494726 - 33494783
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaa 361  Q
    ||||||||||||||| |||||||||||||| | ||| |||||||| ||||| |||||||    
T  33494726 tttttaataatagtacctaataggtactcagctactccaatagag-acctctaacaaaa 33494783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 4277396 - 4277477
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| ||||||  |||||||| |||  ||| |||| |||| |||||||||| ||  ||||||||| |||||    
T  4277396 tttttaataatagtacctaataactactcaaccactcaaattgagaccctctaacaaaaggtctaattgggtcccatcaata 4277477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 8433746 - 8433807
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    ||||||||||||||   ||||||||||||||| ||| |||| |||| |||| ||||||||||    
T  8433746 tttttaataatagtgcttaataggtactcaaccacttcaatggagatcctctaacaaaaggt 8433807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 52669832 - 52669751
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||| |||| |||||||||||||  |||||||||||||||    
T  52669832 tttttaataatagtatctaataggtactcaaccactccaatggagaccctctaacaaaaggtttaattgggtcccaccaata 52669751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 303 - 435
Target Start/End: Original strand, 52119981 - 52120113
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataacattaaaaaattaaggt 402  Q
    ||||||||||||||| ||||||| |||||||| |||||||| |||| |  | ||||||| || ||||| | ||||||  |||||||||| ||   |||||    
T  52119981 tttttaataatagtaactaatagatactcaaccactacaatggagaccagctaacaaaatgtctatatcgatcccactgataacattaagaagcaaaggt 52120080  T
Q  403 aaattgcaattcaaaaacaatagtacaatgaca 435  Q
    ||||||||||  |||| ||||||||||||||||    
T  52120081 aaattgcaatagaaaagcaatagtacaatgaca 52120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 48458038 - 48457955
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| |||||| |||||||||||||||| ||| ||||||||| |||| |||||||||| || ||||| ||||||||||||    
T  48458038 tttttaatgatagtacctaataggtactcaactacttcaatagagaccctctaacaaaaggtctaaatgggacccaccaataac 48457955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 4489582 - 4489501
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||| |||| ||||||| || ||  |||||||||||||||    
T  4489582 tttttaataatagtatctaataggcactcaaccactacaatggagaccctctaacaaaatgtctaattgggtcccaccaata 4489501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 22909496 - 22909415
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||||| ||||||||||||||| ||| |||| |||| |||| | |||||||  ||  |||||||||||||||    
T  22909496 tttttaataatagtatttaataggtactcaaccacttcaatggagaccctctagcaaaaggcctaattgggtcccaccaata 22909415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 45707761 - 45707704
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaa 360  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||| |||| ||||||    
T  45707761 tttttaataatagtacctaataggtactcaaccactccaatagagatcctctaacaaa 45707704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 50596227 - 50596143
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataaca 387  Q
    ||||||||||||||| |||||||||||||||| |||  |||||||| | || | |||||| | || |||| ||||||||||||||    
T  50596227 tttttaataatagtacctaataggtactcaaccactcaaatagagatcttctatcaaaagatataaatggatcccaccaataaca 50596143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 21080038 - 21079993
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagaga 348  Q
    |||||||||||||||| ||||||||||||||| ||| |||||||||    
T  21080038 tttttaataatagtatttaataggtactcaaccacttcaatagaga 21079993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 386
Target Start/End: Original strand, 39096037 - 39096103
Alignment:
Q  320 taataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||||| ||||  ||| || ||||||| || |||| |||||||||||||    
T  39096037 taataggtactcaaccactacaatggagacactctaataaaaggtctaaatggatcccaccaataac 39096103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 53143670 - 53143621
Alignment:
Q  299 ataatttttaataatagtatctaataggtactcaacaactacaatagaga 348  Q
    |||||||||||| |||||| ||||||| |||||||| ||| |||||||||    
T  53143670 ataatttttaattatagtacctaatagatactcaaccactccaatagaga 53143621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 32913983 - 32913900
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||| | ||| ||||||||||| ||||||    
T  32913983 tttttaataatagtatctaataggtactcaatcactccaatagagaacctctaacaaaaagcttaaatgggtcccactaataac 32913900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 15457041 - 15457124
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||| ||||||||| ||| |||| || | ||||||||||||||| ||||| |||||||||||||||    
T  15457041 tttttaataatagtacctaatatgtactcaaccactccaatggacaccctccaacaaaaggtctatataggtcccaccaataac 15457124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 44573874 - 44573955
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||||||| ||| |||| |||| |||| |||||||||||||  ||||||||| |||||    
T  44573874 tttttaataatagtacctaataggtactcaaccactccaatggagatcctctaacaaaaggtttaattgggtcccaacaata 44573955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 3582828 - 3582746
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataa 385  Q
    |||||||||||||||||||||||||||||||| ||| ||||  ||| |||| | ||||||||||| || |||| |||||||||    
T  3582828 tttttaataatagtatctaataggtactcaaccactccaatgtagatcctctatcaaaaggtttaaataggtctcaccaataa 3582746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 14395979 - 14396060
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||||||| |||| |||||||||||||  || || |||||||||    
T  14395979 tttttaataatagtacctaataggtacttaaccactccaatagagaccctctaacaaaaggtttaattgagttccaccaata 14396060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 31636589 - 31636508
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||||||| ||| |||| |||| |||| ||||||| || ||  |||||||||||||||    
T  31636589 tttttaataatagtacctaataggtactcaaccactccaatggagaccctctaacaaaaagtctaattgggtcccaccaata 31636508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 50270855 - 50270776
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaa 382  Q
    ||||||| ||||||| |||||||| ||||||| ||| ||||||||| |||| |||||||||| ||  |||||||||||||    
T  50270855 tttttaacaatagtacctaataggcactcaactactccaatagagaccctctaacaaaaggtctaattgggtcccaccaa 50270776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 51244085 - 51244168
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||||||||||||| | | |||| |||| | || | ||||| ||||| ||||||||||||||||||    
T  51244085 tttttaataatagtacctaataggtactcaactattccaatcgagatcatctatcaaaatgtttaaatgggtcccaccaataac 51244168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 23625225 - 23625145
Alignment:
Q  304 ttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||  ||| ||||||||||| ||| ||||||||| |||| |||||||||| ||  ||| |||||||||||    
T  23625225 ttttaataatagtacttaacaggtactcaaccactccaatagagaccctctaacaaaaggtctaattggatcccaccaata 23625145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 42489116 - 42489034
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| ||||||||||||| || ||| ||||||||| |||| | |||| ||| || |||||| |||||||||||    
T  42489116 tttttaataatagtacctaataggtactcgaccactccaatagagatcctctatcaaatggtctaaatgggt-ccaccaataac 42489034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 4448088 - 4448006
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaa-caaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||||||| ||| |||| |||| |||| || |||||||| ||  |||||||| ||||||    
T  4448088 tttttaataatagtacctaataggtactcaaccactccaatggagaccctctaaccaaaaggtctaattgggtccctccaata 4448006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 31206329 - 31206383
Alignment:
Q  299 ataatttttaataatagtatctaataggtactcaacaactacaatagagaacctc 353  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||||||||| ||||    
T  31206329 ataatttttaataatagtatctaataaatactcaaccactccaatagagaccctc 31206383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 33259434 - 33259516
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataa 385  Q
    |||||||||||||||  ||||||||||||||  ||| ||||||| | |||  ||||||||||||| ||| | |||||||||||    
T  33259434 tttttaataatagtacataataggtactcaatcactccaatagaaaccctgtaacaaaaggtttaaatgagacccaccaataa 33259516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 33279593 - 33279675
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataa 385  Q
    |||||||||||||||  ||||||||||||||  ||| ||||||| | |||  ||||||||||||| ||| | |||||||||||    
T  33279593 tttttaataatagtacataataggtactcaatcactccaatagaaaccctgtaacaaaaggtttaaatgagacccaccaataa 33279675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 386
Target Start/End: Original strand, 33603395 - 33603527
Alignment:
Q  251 aattttgaggtcttaaacggattttacatagacacatcacnnnnnnnnataatttttaataatagtatctaataggtactcaacaactacaatagagaac 350  Q
    |||||||||||||||||||||| | ||||||||| || ||        ||| |||||||||||||||  ||||||||| ||||||||| || || ||| |    
T  33603395 aattttgaggtcttaaacggatctcacatagacatattacttttt---atattttttaataatagtacttaataggtattcaacaactccattaaagatc 33603491  T
Q  351 ctccaacaaaaggtttatatgggtcccaccaataac 386  Q
     || ||||||| ||||| |||||||  |||||||||    
T  33603492 ttctaacaaaatgtttaaatgggtcataccaataac 33603527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 45467660 - 45467718
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaa 361  Q
    |||||||||||||||| ||||||||| ||||| ||| ||||||||| |||| |||||||    
T  45467660 tttttaataatagtatttaataggtattcaaccacttcaatagagatcctctaacaaaa 45467718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 1775023 - 1774983
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaat 343  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  1775023 tttttaataatagtatctaataggtactcaaccactccaat 1774983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 6704179 - 6704223
Alignment:
Q  299 ataatttttaataatagtatctaataggtactcaacaactacaat 343  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||    
T  6704179 ataatttttaataatagtatttaataggtactcaaccactccaat 6704223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 44240435 - 44240511
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccac 379  Q
    |||||||||||||||| ||||||||||||||| ||| |||| |||| |||| | ||||| || || ||| |||||||    
T  44240435 tttttaataatagtatttaataggtactcaactacttcaatggagatcctctatcaaaatgtataaatgagtcccac 44240511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 7789836 - 7789753
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||||||| ||||||| ||||||  ||| |||||||||||||  ||||||| ||| | ||| ||  ||||||||||    
T  7789836 tttttaataatagtatttaataggcactcaatcactccaatagagaacctttaacaaaaagttcaaatgagtatcaccaataac 7789753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 35615473 - 35615556
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||| ||||||||| ||| ||||  ||| |||  || |||| || || ||||||||||||||||||    
T  35615473 tttttaataatagtacctaataagtactcaaccacttcaatgaagaccctttaataaaatgtctaaatgggtcccaccaataac 35615556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 43177841 - 43177924
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||| |||||||||||||| ||| ||| |||||||||   || | |||||||| || | |||||| |||||||||    
T  43177841 tttttaataatagcatctaataggtactaaaccactccaatagagatattctatcaaaaggtctaaacgggtcctaccaataac 43177924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 5300534 - 5300473
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    |||||||||||||||  ||||||||||||||| ||| ||||  ||| |||| ||||||||||    
T  5300534 tttttaataatagtacttaataggtactcaactactccaatgaagatcctctaacaaaaggt 5300473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 386
Target Start/End: Original strand, 5040953 - 5041041
Alignment:
Q  299 ataattttt-aataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||| |||||||||| |||||||||||||||  |||  |||||||| |||  ||||||| || || |||  |||||||||||||    
T  5040953 ataatttttcaataatagtacctaataggtactcaatcactctaatagagagcctgtaacaaaatgtgtaaatgaatcccaccaataac 5041041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 14884726 - 14884686
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaat 343  Q
    ||||||||||||||| |||||||||||||||| ||| ||||    
T  14884726 tttttaataatagtacctaataggtactcaaccactccaat 14884686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 30905557 - 30905619
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtt 365  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||    
T  30905557 tttttaataatagtacctaataggtattcaacaactacaatagagaccctcaaacaaaaggtt 30905619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 437
Target Start/End: Complemental strand, 44104219 - 44104140
Alignment:
Q  357 caaaaggtttatatgggtcccaccaataacattaaaaaattaaggtaaattgcaattcaaaaacaatagtacaatgacatt 437  Q
    |||||||| ||||||||| |||| |||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||    
T  44104219 caaaaggtctatatgggttccacaaataacattaaaaagtca-ggtaaattgcaattgaaaaacaatagtagaatgacatt 44104140  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 41123396 - 41123313
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||| ||||||||||||||||||| ||| |||| |||| | || | |||||||| || ||| ||||||||||||||    
T  41123396 tttttaataatactatctaataggtactcaaccactccaatggagatcatctatcaaaaggtctaaatgagtcccaccaataac 41123313  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 37187635 - 37187553
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaa-caaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||| | | |||  |||||||||| |||| |||||||||||    
T  37187635 tttttaataatagtatctaataggtactcaaccacttcaattgagatctttcaataaaaaggtttaaatggatcccaccaata 37187553  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 14581202 - 14581283
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||||||||||||||||||||| | | ||| |||   |||| | |||||||||||  |||||||||||||||    
T  14581202 tttttaataatagtatctaataggtactcaactagtccaacagaattcctctatcaaaaggtttaattgggtcccaccaata 14581283  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 17793390 - 17793309
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||||||| |||  ||| |||| |||  || ||||||||||  |||||||||||||||    
T  17793390 tttttaataatagtacctaataggtactcaaccactcaaatggagaccctttaagaaaaggtttaattgggtcccaccaata 17793309  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 26705772 - 26705855
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||| |||| |  ||||||| || ||| || |||| ||||||    
T  26705772 tttttaataatagtacctaataggtactcaaccactccaatagagatcctctattaaaaggtctaaatgagttccactaataac 26705855  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 7573094 - 7573139
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagaga 348  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  7573094 tttttaataatagtatttaataggtactcaaccactacaatggaga 7573139  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 14728916 - 14728977
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    |||||||||||| ||  ||||||||||||||| ||| ||||||||| |||| ||||||||||    
T  14728916 tttttaataataatacttaataggtactcaaccactccaatagagatcctctaacaaaaggt 14728977  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 38901229 - 38901309
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||||||| ||| |||| |||| |||| || |||| || ||  |||||||||||||||    
T  38901229 tttttaataatagtacctaataggtactcaaccactccaatggagaccctctaa-aaaaagtctaattgggtcccaccaata 38901309  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 386
Target Start/End: Complemental strand, 24849025 - 24848946
Alignment:
Q  307 taataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| ||  ||||||||||||||| |||  | | |||| |||| ||||||||||||| | ||||||||||||||||    
T  24849025 taataataatacataataggtactcaaccactctattggagaccctctaacaaaaggtttaaaagggtcccaccaataac 24848946  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 32953281 - 32953198
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||| ||||||||| ||||||||||| |||| ||| |||| |||| |||| | ||||| || || ||| ||||||||||||||    
T  32953281 ttttttataatagtacctaataggtacccaaccactccaatggagatcctctatcaaaatgtctaaatgagtcccaccaataac 32953198  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 440
Target Start/End: Original strand, 30905618 - 30905652
Alignment:
Q  406 ttgcaattcaaaaacaatagtacaatgacattgat 440  Q
    |||||||| ||||||||||||||||||||||||||    
T  30905618 ttgcaattgaaaaacaatagtacaatgacattgat 30905652  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 7176694 - 7176755
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    |||||||||||||||  ||||||||||||||| ||| |||| |||| | || ||||||||||    
T  7176694 tttttaataatagtacttaataggtactcaaccactccaatggagatcttctaacaaaaggt 7176755  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 10288156 - 10288095
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    ||||||||||||||| |||||||||||||||| ||| ||||  ||| |||| | ||||||||    
T  10288156 tttttaataatagtacctaataggtactcaaccactccaatgaagatcctctatcaaaaggt 10288095  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 24845814 - 24845762
Alignment:
Q  381 aataacattaaaaaa--ttaaggtaaattgcaattcaaaaacaatagtacaat 431  Q
    |||||||||||||||  | |||||||||| ||||| |||||||||||||||||    
T  24845814 aataacattaaaaaaagtcaaggtaaattacaattgaaaaacaatagtacaat 24845762  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 11703169 - 11703252
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||| |||||| |||||||||||||||| ||| ||||||||| |||| |||||||||| || ||| | ||||||||||||    
T  11703169 tttttaatgatagtacctaataggtactcaaccactccaatagagaccctctaacaaaaggtctaaatgagacccaccaataac 11703252  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 6793901 - 6793982
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||||||||| ||| |||| || | |||| |||||||||| ||  |||||||||||||||    
T  6793901 tttttaataatagtacctaataggtactcaaccactccaatggaaaccctctaacaaaaggtctaattgggtcccaccaata 6793982  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 4405690 - 4405774
Alignment:
Q  302 atttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||| |||| |||| || |||||||| ||| |||| |||| |||||| ||||| || || ||||||||||||||||||    
T  4405690 atttttaataagagtacctaacagctactcaaccactccaatggagatcctccatcaaaatgtctaaatgggtcccaccaataac 4405774  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 378690 - 378629
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggt 364  Q
    ||||||||||||||| |||||||||||| ||| ||| |||| |||| |||| ||||||||||    
T  378690 tttttaataatagtacctaataggtactaaaccactccaatggagaccctctaacaaaaggt 378629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 30250442 - 30250359
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    |||||||||||| ||| ||||||||| ||||||||| ||||||||| |||| || |||| || || ||| ||| || |||||||    
T  30250442 tttttaataatactatttaataggtaatcaacaactccaatagagatcctctaagaaaaagtctaaatgtgtctcatcaataac 30250359  T

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Target: scaffold0110 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 26736 - 26817
Alignment:
Q  303 tttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||||| |||| |||||||||| ||  |||||| ||||||||    
T  26736 tttttaataatagtacctaataggtattcaaccactccaatagagaccctctaacaaaaggtctaattgggtctcaccaata 26817  T

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Target: scaffold1114 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 2423 - 2343
Alignment:
Q  304 ttttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaata 384  Q
    |||||||||||||| |||||||||||||||| ||| |||| |||| |||| |||||||||| ||  |||||| ||||||||    
T  2423 ttttaataatagtacctaataggtactcaaccactccaatggagaccctctaacaaaaggtctaattgggtcgcaccaata 2343  T

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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 386
Target Start/End: Original strand, 4817 - 4898
Alignment:
Q  305 tttaataatagtatctaataggtactcaacaactacaatagagaacctccaacaaaaggtttatatgggtcccaccaataac 386  Q
    ||||||||||||| ||||||||||  |||| ||| |||||||||  ||| ||||||| ||| | || |||||||||||||||    
T  4817 tttaataatagtacctaataggtatccaaccactccaatagagattctctaacaaaatgttaaaattggtcccaccaataac 4898  T

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