View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2476_low_7 (Length: 248)
Name: NF2476_low_7
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 1725306 - 1725529
Alignment:
| Q |
7 |
tgggtagattattctaaacatgttgctacaagttcaaacgcaatcataaacaataaaaatattgtggatgctactaccaccaaggatgatattgatatgt |
106 |
Q |
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| T |
1725306 |
tggggagattcttctaaacatgttgctacaagttcaaacgcaatcataaaaaataaaaatattgtggatgctactaccaccaaggatgatattgatatgt |
1725405 |
T |
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| Q |
107 |
cgaagttcaaagccgaagaagaatcctccaattatgattcatgtgggcttgatttgtcactaagactttaaatttagtttttatattttgttttcatgtc |
206 |
Q |
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| T |
1725406 |
cgaagttcaaagctgaagaagaatcctccaattatgattcatgtgggcttgatttgtcactaagactttaaatttagtttttatattttgttttcatgtc |
1725505 |
T |
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| Q |
207 |
aatgttgctgctgatttgattgat |
230 |
Q |
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| T |
1725506 |
aatgttgctgctgatttgattgat |
1725529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 1745003 - 1745222
Alignment:
| Q |
12 |
agattattctaaacatgttgctacaagttcaaacgcaatcataaacaataaaaatattgtggatgctactaccacca---aggatgatattgatatgtcg |
108 |
Q |
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| T |
1745003 |
agattcttctacaaatgttgccacaagttcaagcacaatcataaacaataaaaatagtgtggatcctactactaccagcaaggatgatattgatttgtcg |
1745102 |
T |
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| Q |
109 |
aagttcaaagccgaagaagaatcctccaattatgattcatgtgggcttgatttgtcactaagactttaaatttagtttttatattttgttttcatgtcaa |
208 |
Q |
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| T |
1745103 |
aagttcaacgcagaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcagtttttatattttgttttcatggcaa |
1745202 |
T |
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| Q |
209 |
tgttgctgctgatttgattg |
228 |
Q |
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| T |
1745203 |
tgttgctgttaatttgattg |
1745222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 1739666 - 1739882
Alignment:
| Q |
12 |
agattattctaaacatgttgctacaagttcaaacgcaatcataaacaataaaaatattgtggatgctactaccaccaaggatgatattgatatgtcgaag |
111 |
Q |
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| T |
1739666 |
agattcttctacaaatgttgctacaagttcaagtacaatcataaacaataaaaatagtgaggatcatactactaccaaggataatattgatctgtctaag |
1739765 |
T |
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| Q |
112 |
ttcaaagccgaagaagaatcctccaattatgattcatgtgggcttgatttgtcactaagactttaaatttagtttttatattttgttttcatgtcaatgt |
211 |
Q |
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| T |
1739766 |
tttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcaatttttatattttgttttcatgtcaatgt |
1739865 |
T |
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| Q |
212 |
tgctgctgatttgattg |
228 |
Q |
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| T |
1739866 |
tgctgttgatttgattg |
1739882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 1760747 - 1760914
Alignment:
| Q |
33 |
tacaagttcaaacgcaatcataaacaataaaaatattgtggatgctactaccaccaaggatgatattgatatgtcgaagttcaaagccgaagaagaatcc |
132 |
Q |
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||||||||||||| |||||||| |||||||||||| |||| | |||| ||| | ||||||||| || || |||||||| |||||||||||| |
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| T |
1760747 |
tacaagttcaaactcaatcatacacaataaaaataatgtgtctcttacttataccgaagatgatattcatcaatcaaagttcaactttgaagaagaatcc |
1760846 |
T |
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| Q |
133 |
tccaattatgattcatgtgggcttgatttgtcactaagactttaaatttagtttttatattttgttttc |
201 |
Q |
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| T |
1760847 |
tccaattcggaatcttatgcgcttgatttatcacttaagctttaaattcag-ttttatattttgttttc |
1760914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 1763953 - 1763993
Alignment:
| Q |
172 |
ctttaaatttagtttttatattttgttttcatgtcaatgtt |
212 |
Q |
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| T |
1763953 |
ctttaaattcagtttttatattttgtttccatgtcgatgtt |
1763993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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