View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2476_low_8 (Length: 246)
Name: NF2476_low_8
Description: NF2476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2476_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7098947 - 7098722
Alignment:
| Q |
1 |
taatgacaagttcagtgaagatatcatttgtaatttatgcttaaaattcccatgcttataattggcatcaaatgtgctcttaatttgggtttcaaatagg |
100 |
Q |
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| T |
7098947 |
taatgacaagttcagtgaagatatcatttgtaatttatgcttaaaattcctatgcttataattggcatcaaatgtgctcttaatttgggtttcaaatagg |
7098848 |
T |
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| Q |
101 |
ttatt-ttttaaaccgattttgttgctgctgtaaattactgtccaacacctatttcaatttgataaa-nnnnnnnnnnnnattccataggtatgaggctg |
198 |
Q |
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| T |
7098847 |
ttatttttttaaactgattttgctgttgctgtaaattattgtccaacacct-------cttgataaattttactttttttattccataggtatgagtctg |
7098755 |
T |
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| Q |
199 |
aacttattgaagaaatagttaaaagtgtgttga |
231 |
Q |
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| T |
7098754 |
aacttattgaagaaatagttaaaagtgtgttga |
7098722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 7081899 - 7081851
Alignment:
| Q |
183 |
cataggtatgaggctgaacttattgaagaaatagttaaaagtgtgttga |
231 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
7081899 |
cataggtatgatgctgaactcgttgaagaaatagttaaaagtgtgttga |
7081851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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