View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2477_high_3 (Length: 261)

Name: NF2477_high_3
Description: NF2477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2477_high_3
NF2477_high_3
[»] chr7 (14 HSPs)
chr7 (8-252)||(22069461-22069705)
chr7 (12-252)||(22062996-22063236)
chr7 (2-252)||(22080200-22080450)
chr7 (67-239)||(22088002-22088174)
chr7 (12-88)||(6865428-6865504)
chr7 (15-80)||(20338293-20338358)
chr7 (42-149)||(20375073-20375180)
chr7 (17-88)||(20141449-20141520)
chr7 (17-142)||(20133894-20134018)
chr7 (192-239)||(20338458-20338505)
chr7 (192-229)||(661187-661224)
chr7 (71-139)||(661262-661330)
chr7 (192-236)||(6865292-6865336)
chr7 (40-88)||(20126769-20126817)
[»] chr1 (1 HSPs)
chr1 (16-142)||(15960577-15960703)
[»] chr4 (1 HSPs)
chr4 (72-148)||(11982290-11982366)
[»] chr5 (2 HSPs)
chr5 (204-239)||(29641902-29641937)
chr5 (114-142)||(23086148-23086176)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 22069461 - 22069705
Alignment:
Q  8 ggaagtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||    
T  22069461 ggaaatgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatccactgaacgacaaggctttccgc 22069560  T
Q  108 tacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttgga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22069561 tacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttgga 22069660  T
Q  208 acccagccacaaggataatatcagaaaaattacatggtgatgatg 252  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  22069661 acccagccacaaggataatatcagaaaaatttcatggtgatgatg 22069705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 22062996 - 22063236
Alignment:
Q  12 gtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctaca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||| |||||    
T  22062996 gtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaactgaatgacaaggattgccactaca 22063095  T
Q  112 tagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttggaaccc 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063096 tcgttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttggaaccc 22063195  T
Q  212 agccacaaggataatatcagaaaaattacatggtgatgatg 252  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  22063196 agccacaaggataatatcagaaaaatttcatggtgatgatg 22063236  T

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Target: chr7; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 22080200 - 22080450
Alignment:
Q  2 ttgcatggaagtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggat 101  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| ||| ||||| |||||     
T  22080200 ttgcatggtcgtgaccttcacagttttccgtttgctcgagaaccctcccatcattatcaatctttcaaaatatccttactatcgactcaaggaaaaggac 22080299  T
Q  102 tgccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtt 201  Q
    |||  | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22080300 tgcttccacattgttggttcctgcaatggattgctttgcttatttggcggaactggcaatagagaggacactggggggtatagagagaattggcttcgtt 22080399  T
Q  202 tttggaacccagccacaaggataatatcagaaaaattacatggtgatgatg 252  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  22080400 tttggaacccagccacaaggacaatatcagaaaaattagatggtgatgatg 22080450  T

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Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 22088002 - 22088174
Alignment:
Q  67 caagagatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagaga 166  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||  |||||||     
T  22088002 caagagatccttactatcaactgacggacaaggattgccgctacatcattggttcctgcaatggattgctttgcttattcggcggaagtgagtatagagc 22088101  T
Q  167 ggacaatggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaatta 239  Q
    |||| | || |||||||||||||| ||  ||||| |||||||||| |||||||||| ||||||||||||||||    
T  22088102 ggacgaaggagggtatagagagaaatgaattcgtgtttggaacccggccacaaggacaatatcagaaaaatta 22088174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 6865504 - 6865428
Alignment:
Q  12 gtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 88  Q
    ||||||||||| ||| | |||||||| ||| |||||||||||||||||||||||||  |||||||||| ||||||||    
T  6865504 gtgtccttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatccttattatcaact 6865428  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 20338293 - 20338358
Alignment:
Q  15 tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttac 80  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||  ||||||||||    
T  20338293 tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac 20338358  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 20375180 - 20375073
Alignment:
Q  42 aaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgct 141  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||  | |||||  |  ||| | |||||||||| || ||||||||||| || ||||    
T  20375180 aaccctccaatcattttcaatcttccagaagatccttactatcaacttgatgacaaacacggcctcgacatagttggctcttgcaatggattactctgct 20375081  T
Q  142 tatttggc 149  Q
    | ||||||    
T  20375080 tgtttggc 20375073  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 20141520 - 20141449
Alignment:
Q  17 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 88  Q
    |||||| ||||| ||||||||| | ||||||||||||||||||||||| |||  ||||||| || |||||||    
T  20141520 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaact 20141449  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 20134018 - 20133894
Alignment:
Q  17 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagtt 116  Q
    |||||| ||||| ||||||||| ||||||||||||||| || ||||||||||  ||||||| || ||||||| | | ||||||| || |  ||  | |||    
T  20134018 cttcactgtttttcgtttgctccagaaccctccaatca-taccaatcttccagaagatcctaaccatcaacttacgaacaaggactgtcattatgttgtt 20133920  T
Q  117 ggttcctgcaatggattgctttgctt 142  Q
    ||||| ||||||||||| || |||||    
T  20133919 ggttcatgcaatggattactctgctt 20133894  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 20338458 - 20338505
Alignment:
Q  192 tggcttcgtttttggaacccagccacaaggataatatcagaaaaatta 239  Q
    |||||||||||||||||||| |||||||||| |||||| | |||||||    
T  20338458 tggcttcgtttttggaaccctgccacaaggaaaatatctgcaaaatta 20338505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 661224 - 661187
Alignment:
Q  192 tggcttcgtttttggaacccagccacaaggataatatc 229  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  661224 tggcttcgtttttggaacccggccacaaggacaatatc 661187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 661330 - 661262
Alignment:
Q  71 agatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttg 139  Q
    ||||||||||||||||||    |||||  |||||||| | || |||||||| |||||||||||||||||    
T  661330 agatccttactatcaacttgctgacaaatattgccgccatattgttggttcttgcaatggattgctttg 661262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 6865336 - 6865292
Alignment:
Q  192 tggcttcgtttttggaacccagccacaaggataatatcagaaaaa 236  Q
    ||||||||||||||||||||||||| ||||| | |||| ||||||    
T  6865336 tggcttcgtttttggaacccagccataaggaaattatcggaaaaa 6865292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 20126817 - 20126769
Alignment:
Q  40 agaaccctccaatcattatcaatcttccaagagatccttactatcaact 88  Q
    ||||||||||| ||||| ||||||||||||  ||||| |||||||||||    
T  20126817 agaaccctccattcattttcaatcttccaaaggatccatactatcaact 20126769  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 15960577 - 15960703
Alignment:
Q  16 ccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagt 115  Q
    ||||||||||||| ||||||||||| ||||||||||||||| | |||||||| | ||||||||| |||||| | || |||||||||||   ||| || ||    
T  15960577 ccttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatccttattatcaatttaaagacaaggattgtgtctatattgt 15960676  T
Q  116 tggttcctgcaatggattgctttgctt 142  Q
    |||||| ||||||||||||||||||||    
T  15960677 tggttcttgcaatggattgctttgctt 15960703  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 11982366 - 11982290
Alignment:
Q  72 gatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgcttatttgg 148  Q
    ||||||||||||||||||||||||||||| ||   | | ||  |||||||||||||||| ||||||||||| |||||    
T  11982366 gatccttactatcaactgaaggacaaggactgtgtccatattattggttcctgcaatggtttgctttgcttgtttgg 11982290  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 29641902 - 29641937
Alignment:
Q  204 tggaacccagccacaaggataatatcagaaaaatta 239  Q
    |||||||||||||||||||||||||| |||||||||    
T  29641902 tggaacccagccacaaggataatatcggaaaaatta 29641937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 23086148 - 23086176
Alignment:
Q  114 gttggttcctgcaatggattgctttgctt 142  Q
    |||||||||||||||||||||||||||||    
T  23086148 gttggttcctgcaatggattgctttgctt 23086176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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