View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2477_low_2 (Length: 306)
Name: NF2477_low_2
Description: NF2477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2477_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 2451104 - 2451390
Alignment:
| Q |
18 |
aatatattatgttaattcaattgaagtggttatttgtaaacaatgaaatgagtagacgaataatgtttatgctcactaaccatggtatgcattttctaac |
117 |
Q |
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| T |
2451104 |
aatatattatgttaattcaattgaagtagttatttgtaaacaatgaaatgagtagacgaataatgtttatgctcactaaccatggtatgcattttctaac |
2451203 |
T |
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| Q |
118 |
aaatagtatgtataaaaactaatgctatatagacttgcttatacctgtggtatatatagacatggattttgagcgcccattaataaacaattcacgtttg |
217 |
Q |
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| T |
2451204 |
aaatagtgtgtataaaaactaatgctatata--cttgcttatacctatggtatatatagacatggattttgagcgcccattaataaacaattcacgtttg |
2451301 |
T |
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| Q |
218 |
ttttccaatcatcttggtcttagctaggtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaaggtccct |
306 |
Q |
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| T |
2451302 |
ttttccaatcatcttggtcttagctaggtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaaggtccct |
2451390 |
T |
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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 23729998 - 23730041
Alignment:
| Q |
240 |
gctaggtatgaagtgaaaattggaaaacaagaacaaattttcaa |
283 |
Q |
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| T |
23729998 |
gctaggtatgaagtgaaaattggaaaacaagaacaaattttcaa |
23730041 |
T |
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