View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2478_high_2 (Length: 382)

Name: NF2478_high_2
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2478_high_2
NF2478_high_2
[»] chr4 (34 HSPs)
chr4 (4-213)||(9780028-9780237)
chr4 (307-382)||(1657651-1657726)
chr4 (307-382)||(9661811-9661886)
chr4 (307-382)||(4634241-4634316)
chr4 (307-382)||(16991830-16991905)
chr4 (310-382)||(28588522-28588594)
chr4 (307-382)||(54420793-54420868)
chr4 (317-374)||(14542601-14542658)
chr4 (315-382)||(43156742-43156810)
chr4 (307-382)||(1646022-1646097)
chr4 (307-382)||(3673581-3673656)
chr4 (307-382)||(51646051-51646126)
chr4 (311-382)||(3169002-3169073)
chr4 (315-382)||(11817038-11817105)
chr4 (315-382)||(34115733-34115800)
chr4 (307-382)||(37869498-37869572)
chr4 (311-376)||(6408401-6408467)
chr4 (311-377)||(46729005-46729071)
chr4 (328-382)||(41486554-41486608)
chr4 (311-376)||(4622798-4622862)
chr4 (310-382)||(38546193-38546263)
chr4 (342-382)||(23067929-23067969)
chr4 (315-382)||(5388481-5388548)
chr4 (307-376)||(7242856-7242922)
chr4 (311-382)||(30416703-30416774)
chr4 (307-378)||(33021011-33021082)
chr4 (307-357)||(40859619-40859669)
chr4 (325-374)||(4959664-4959712)
chr4 (342-375)||(42972031-42972064)
chr4 (322-382)||(29577166-29577226)
chr4 (342-382)||(52555802-52555842)
chr4 (317-376)||(44021652-44021711)
chr4 (307-357)||(15730076-15730126)
chr4 (334-374)||(1124921-1124961)
[»] chr1 (34 HSPs)
chr1 (224-382)||(6212967-6213125)
chr1 (307-382)||(22344993-22345068)
chr1 (307-378)||(30853868-30853939)
chr1 (311-382)||(52839385-52839456)
chr1 (307-376)||(44514077-44514146)
chr1 (311-365)||(14717340-14717394)
chr1 (319-377)||(38646554-38646612)
chr1 (325-382)||(52839497-52839554)
chr1 (315-382)||(13691839-13691907)
chr1 (310-378)||(33703594-33703662)
chr1 (342-382)||(44562830-44562870)
chr1 (324-382)||(22032170-22032229)
chr1 (311-374)||(27469821-27469884)
chr1 (307-354)||(45658673-45658720)
chr1 (336-382)||(5832220-5832266)
chr1 (325-382)||(17579744-17579801)
chr1 (310-367)||(29067017-29067074)
chr1 (319-382)||(9189211-9189274)
chr1 (312-379)||(26199560-26199630)
chr1 (315-377)||(46589140-46589204)
chr1 (342-382)||(630866-630906)
chr1 (307-382)||(10877303-10877379)
chr1 (312-382)||(2875647-2875717)
chr1 (307-382)||(35077971-35078044)
chr1 (307-353)||(1767937-1767983)
chr1 (315-381)||(18889032-18889097)
chr1 (315-380)||(2350588-2350653)
chr1 (342-375)||(48655154-48655187)
chr1 (307-375)||(17920347-17920415)
chr1 (342-382)||(21326466-21326506)
chr1 (339-375)||(33125911-33125946)
chr1 (307-380)||(34659712-34659781)
chr1 (310-374)||(37685185-37685248)
chr1 (310-374)||(37700270-37700333)
[»] chr8 (36 HSPs)
chr8 (307-382)||(31874042-31874117)
chr8 (311-382)||(9269983-9270054)
chr8 (307-382)||(10042719-10042794)
chr8 (307-382)||(16937420-16937495)
chr8 (317-374)||(44295284-44295341)
chr8 (311-377)||(23766704-23766770)
chr8 (310-382)||(36545862-36545934)
chr8 (315-382)||(9992631-9992698)
chr8 (311-382)||(15665501-15665572)
chr8 (307-382)||(32061752-32061827)
chr8 (307-382)||(37658924-37658999)
chr8 (307-376)||(13864317-13864386)
chr8 (315-380)||(14327445-14327510)
chr8 (307-375)||(37719809-37719877)
chr8 (310-382)||(32256802-32256875)
chr8 (310-382)||(26937486-26937558)
chr8 (319-382)||(1215420-1215483)
chr8 (311-381)||(14115875-14115944)
chr8 (315-372)||(284566-284623)
chr8 (315-372)||(631254-631311)
chr8 (315-372)||(817066-817123)
chr8 (319-372)||(31147891-31147944)
chr8 (311-363)||(31713135-31713187)
chr8 (311-362)||(3680883-3680934)
chr8 (315-382)||(14530989-14531056)
chr8 (325-382)||(6833454-6833512)
chr8 (332-382)||(7269545-7269595)
chr8 (307-376)||(18190931-18190999)
chr8 (342-382)||(8054889-8054929)
chr8 (310-382)||(32920613-32920685)
chr8 (311-382)||(7281208-7281279)
chr8 (264-306)||(31595117-31595159)
chr8 (132-185)||(17988988-17989041)
chr8 (135-184)||(22738594-22738643)
chr8 (307-360)||(37129761-37129814)
chr8 (343-375)||(5989624-5989656)
[»] chr3 (35 HSPs)
chr3 (307-382)||(1165477-1165552)
chr3 (307-382)||(20201139-20201214)
chr3 (307-382)||(20203321-20203396)
chr3 (307-382)||(43029641-43029716)
chr3 (307-382)||(50519748-50519823)
chr3 (309-382)||(41882489-41882562)
chr3 (309-382)||(22286830-22286903)
chr3 (310-382)||(35501840-35501911)
chr3 (307-382)||(22844009-22844084)
chr3 (307-382)||(40462076-40462151)
chr3 (307-382)||(21803488-21803563)
chr3 (307-382)||(42106069-42106144)
chr3 (307-382)||(20251609-20251685)
chr3 (315-382)||(1220296-1220363)
chr3 (307-382)||(1806541-1806616)
chr3 (315-382)||(37051590-37051657)
chr3 (311-382)||(53426766-53426837)
chr3 (305-382)||(2598039-2598116)
chr3 (307-382)||(913399-913474)
chr3 (311-382)||(25374151-25374221)
chr3 (307-366)||(43839613-43839672)
chr3 (315-377)||(43242777-43242839)
chr3 (315-377)||(50460160-50460222)
chr3 (322-375)||(25939564-25939615)
chr3 (310-358)||(47914688-47914736)
chr3 (307-382)||(11846573-11846648)
chr3 (307-382)||(40796991-40797065)
chr3 (307-357)||(29776782-29776832)
chr3 (311-373)||(33978010-33978072)
chr3 (337-382)||(45664217-45664262)
chr3 (319-382)||(27831082-27831144)
chr3 (332-382)||(4019585-4019634)
chr3 (132-213)||(31132971-31133053)
chr3 (312-370)||(7656568-7656623)
chr3 (307-339)||(14741438-14741470)
[»] chr2 (42 HSPs)
chr2 (307-382)||(3390390-3390465)
chr2 (307-382)||(25771403-25771478)
chr2 (307-382)||(6089851-6089926)
chr2 (307-382)||(25516452-25516527)
chr2 (311-382)||(27024220-27024291)
chr2 (307-382)||(27191416-27191491)
chr2 (307-382)||(27841230-27841305)
chr2 (307-382)||(40125347-40125422)
chr2 (307-382)||(41176820-41176895)
chr2 (309-382)||(44167790-44167863)
chr2 (323-382)||(29812696-29812755)
chr2 (317-382)||(5930391-5930456)
chr2 (310-382)||(3602946-3603018)
chr2 (310-382)||(10588999-10589071)
chr2 (309-381)||(36507891-36507963)
chr2 (315-382)||(37883619-37883686)
chr2 (307-377)||(43566835-43566904)
chr2 (315-376)||(3464925-3464986)
chr2 (307-382)||(42105833-42105908)
chr2 (307-379)||(26491261-26491333)
chr2 (308-374)||(9715634-9715700)
chr2 (307-377)||(25623131-25623201)
chr2 (311-377)||(34479918-34479984)
chr2 (311-379)||(41841911-41841980)
chr2 (310-359)||(44951463-44951512)
chr2 (342-382)||(7640437-7640477)
chr2 (335-382)||(15674055-15674102)
chr2 (307-382)||(19581084-19581159)
chr2 (322-364)||(16720916-16720958)
chr2 (320-370)||(19953355-19953405)
chr2 (311-376)||(25237413-25237478)
chr2 (312-365)||(31263052-31263105)
chr2 (311-363)||(4878795-4878847)
chr2 (318-382)||(5071451-5071515)
chr2 (319-375)||(44441356-44441412)
chr2 (330-377)||(35353633-35353680)
chr2 (335-381)||(16880041-16880087)
chr2 (307-382)||(3398060-3398137)
chr2 (324-378)||(13268549-13268602)
chr2 (307-337)||(32909034-32909064)
chr2 (335-375)||(17037737-17037777)
chr2 (337-380)||(25067830-25067873)
[»] chr5 (26 HSPs)
chr5 (298-382)||(34893997-34894081)
chr5 (311-382)||(6887259-6887330)
chr5 (307-382)||(31645787-31645862)
chr5 (307-382)||(2415358-2415433)
chr5 (311-378)||(41358000-41358067)
chr5 (309-382)||(28618564-28618637)
chr5 (310-382)||(41554447-41554519)
chr5 (307-382)||(6647994-6648069)
chr5 (315-382)||(33486651-33486718)
chr5 (311-382)||(18472806-18472874)
chr5 (310-382)||(9035029-9035101)
chr5 (307-382)||(37424950-37425026)
chr5 (311-382)||(8812233-8812304)
chr5 (311-382)||(41988146-41988217)
chr5 (311-381)||(4070518-4070586)
chr5 (316-382)||(19646122-19646188)
chr5 (307-382)||(34950434-34950510)
chr5 (311-382)||(15710502-15710575)
chr5 (336-382)||(29310430-29310476)
chr5 (310-375)||(41063484-41063547)
chr5 (132-213)||(36439907-36439989)
chr5 (137-213)||(39963933-39964010)
chr5 (314-354)||(32390737-32390777)
chr5 (325-382)||(40565236-40565293)
chr5 (346-374)||(4727017-4727045)
chr5 (310-346)||(10924186-10924222)
[»] chr7 (36 HSPs)
chr7 (307-382)||(24470353-24470428)
chr7 (307-382)||(24475301-24475376)
chr7 (307-379)||(40775225-40775297)
chr7 (307-382)||(47749692-47749767)
chr7 (307-382)||(49166885-49166960)
chr7 (307-382)||(8611703-8611778)
chr7 (307-382)||(28015314-28015389)
chr7 (319-382)||(14734131-14734194)
chr7 (328-382)||(24045313-24045367)
chr7 (316-382)||(29804757-29804823)
chr7 (312-382)||(35141834-35141904)
chr7 (307-382)||(5025137-5025213)
chr7 (310-382)||(21329377-21329448)
chr7 (307-382)||(33530549-33530622)
chr7 (310-382)||(38649439-38649511)
chr7 (307-377)||(8319271-8319342)
chr7 (307-382)||(25855301-25855380)
chr7 (307-373)||(35135273-35135339)
chr7 (304-382)||(36350166-36350246)
chr7 (311-382)||(23177662-23177734)
chr7 (315-375)||(23732481-23732541)
chr7 (338-382)||(43807231-43807275)
chr7 (331-382)||(16263369-16263420)
chr7 (311-382)||(41748582-41748653)
chr7 (310-348)||(35661494-35661532)
chr7 (342-382)||(30992904-30992944)
chr7 (307-338)||(135230-135261)
chr7 (324-363)||(2528300-2528339)
chr7 (316-375)||(29804976-29805035)
chr7 (307-382)||(34595731-34595806)
chr7 (307-362)||(37399574-37399629)
chr7 (332-378)||(4028157-4028202)
chr7 (319-365)||(4529903-4529949)
chr7 (132-213)||(25685286-25685368)
chr7 (310-379)||(46918363-46918432)
chr7 (342-382)||(47156389-47156429)
[»] chr6 (20 HSPs)
chr6 (307-382)||(16913286-16913361)
chr6 (307-382)||(4663901-4663976)
chr6 (310-382)||(12576559-12576631)
chr6 (312-379)||(891551-891618)
chr6 (311-382)||(10744541-10744612)
chr6 (312-382)||(15128230-15128299)
chr6 (319-380)||(7049217-7049278)
chr6 (307-376)||(8644203-8644272)
chr6 (307-382)||(32457604-32457679)
chr6 (307-382)||(32574411-32574486)
chr6 (342-382)||(19759781-19759821)
chr6 (307-382)||(32804253-32804327)
chr6 (310-375)||(32257945-32258009)
chr6 (313-374)||(34020582-34020643)
chr6 (307-382)||(20844965-20845041)
chr6 (307-375)||(33194563-33194631)
chr6 (315-366)||(31747926-31747977)
chr6 (311-377)||(27575113-27575179)
chr6 (343-382)||(548946-548985)
chr6 (337-376)||(13234194-13234233)
[»] scaffold0045 (1 HSPs)
scaffold0045 (307-382)||(9729-9804)
[»] scaffold1294 (1 HSPs)
scaffold1294 (311-374)||(742-805)
[»] scaffold0011 (1 HSPs)
scaffold0011 (307-382)||(10977-11052)
[»] scaffold0009 (1 HSPs)
scaffold0009 (307-382)||(105010-105085)
[»] scaffold0665 (1 HSPs)
scaffold0665 (311-381)||(1174-1243)
[»] scaffold0112 (1 HSPs)
scaffold0112 (316-382)||(25595-25661)
[»] scaffold0340 (1 HSPs)
scaffold0340 (334-375)||(11865-11906)
[»] scaffold0330 (1 HSPs)
scaffold0330 (132-200)||(11017-11086)
[»] scaffold0012 (1 HSPs)
scaffold0012 (313-362)||(244598-244647)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 9780028 - 9780237
Alignment:
Q  4 ccaaaataaacaaaatataatatgctgcacaacgagatagaaattcaacaaatctctcccgtttttctaatcccttggtccaaaatctcataaagtacaa 103  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  9780028 ccaaaataaacaaaatataatatgcagcacaacgggatagaaattcaacaaatctctcccgtttttcaaatcccttggtccaaattctcataaagtacaa 9780127  T
Q  104 gtatgaaatatgcttttttattgatgcaattttatatgaatatctttaaataagaaatattatttcagtttaaatagactaacaactaatagataaaaga 203  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9780128 gtatgaaatatgcttttttattgatggaatttcatatgaacatctttaaataagaaatattatttcactttaaatagactaacaactaatagataaaaga 9780227  T
Q  204 gattaaactc 213  Q
    ||||||||||    
T  9780228 gattaaactc 9780237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 1657726 - 1657651
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657726 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 1657651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 9661811 - 9661886
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9661811 aaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 9661886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 4634241 - 4634316
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  4634241 aaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctcta 4634316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 16991830 - 16991905
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  16991830 aaccctagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcacccatcta 16991905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 28588522 - 28588594
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  28588522 cctagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcacccctcta 28588594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 54420868 - 54420793
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  54420868 aaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcactcctcta 54420793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 14542658 - 14542601
Alignment:
Q  317 tcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14542658 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 14542601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 43156742 - 43156810
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgattta-gggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  43156742 tttcttctccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcacccctcta 43156810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 1646097 - 1646022
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||| |||||| || ||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  1646097 aaccctagtttcttcttcttcattcaccaaagagagatgatttagggttaattgttgacccaaaatcacccctcta 1646022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 3673581 - 3673656
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||||||||| || ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  3673581 aaccctactttcttctcatttatccaccaaagaggggtgatttagggtcaatttttgaccccaaatcacccctcta 3673656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 51646051 - 51646126
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||||    
T  51646051 aaccctactttcttcaccttcatccatcaaagagagatgatttatggtcaatttttaacctaaaatcacccctcta 51646126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 3169002 - 3169073
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||| |||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  3169002 ctagttttttcttcttcattcaccaaagagaggtgatttagagtcaattattgacccaaaatcacccctcta 3169073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 11817038 - 11817105
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||| ||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||    
T  11817038 tttcttcttcttcatccatcaaagaggggtggtttagggttaagttttgacccaaaatcacccctcta 11817105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 34115800 - 34115733
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||| |||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  34115800 tttcttctcattcatctaccaaagagagataatttagggtcaatttttgacccaaaatcacccctcta 34115733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 37869572 - 37869498
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || | ||||||||| |||||||    
T  37869572 aaccctagtttcttctccttcatccattaaagagatgtgatttagggtcaattgttta-ccaaaatcatccctcta 37869498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 6408401 - 6408467
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagag-aggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||    
T  6408401 ctagtttcttctccttcatccaccaaagaggaggtgattaagggtcaattttttacccaaaatcacc 6408467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 46729071 - 46729005
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    ||||||| ||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  46729071 ctagttttttcactttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 46729005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 41486554 - 41486608
Alignment:
Q  328 atccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  41486554 atccatcaaagaggggttatttagggtcaatttttgatccaaaatcacccctcta 41486608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 4622862 - 4622798
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    |||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| |||||||||||    
T  4622862 ctagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 4622798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 38546263 - 38546193
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| ||| ||||| ||||||||| || |||||| ||||||  |||||||||||||||||||||||    
T  38546263 cctagtttcttttccgtcatctatcaaagaggggagatttaaggtcaa--tttgacccaaaatcacccctcta 38546193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 23067969 - 23067929
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  23067969 ggtgatttagggtcaatttttgaccctaaatcacccctcta 23067929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 5388481 - 5388548
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||| |||| | ||| |||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  5388481 tttcttctacttctttcattaaagaggggtgatttagggtcaatttttgaactcaaatcacccctcta 5388548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 7242922 - 7242856
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    ||||||||||||||||   | ||||| |||| || || ||||||||||||||||||||||||||||||||    
T  7242922 aaccctagtttcttct---ttatccaccaaaaaggggcgatttagggtcaatttttgacccaaaatcacc 7242856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 30416774 - 30416703
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||  ||||||||| |||| || ||| ||||| ||||||||||||| |||||||||| ||||||    
T  30416774 ctagtttcttcatcttcatccaccaaaaaggggtaatttatggtcaatttttgaaccaaaatcacacctcta 30416703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 33021082 - 33021011
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccc 378  Q
    ||||||| |||  ||||||||||||| ||||||| |||| ||| ||||||| ||||||||| ||||||||||    
T  33021082 aaccctaattttatctccttcatccaccaaagaggggtggttttgggtcaaattttgaccccaaatcacccc 33021011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 40859619 - 40859669
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaa 357  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  40859619 aaccctagtttcttcgtcttcatccaccaaagaggggtgatttagggtcaa 40859669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 4959712 - 4959664
Alignment:
Q  325 ttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  4959712 ttcatccatcaacgag-ggtgatttagggtcaatttttgatccaaaatca 4959664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 42972031 - 42972064
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcac 375  Q
    ||||||||||||||||||||||||||||||||||    
T  42972031 ggtgatttagggtcaatttttgacccaaaatcac 42972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 29577226 - 29577166
Alignment:
Q  322 tccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||| ||| || ||||||||||||||| |||||||| ||||||  ||||||||    
T  29577226 tccttcatccataaaaaaggggtgatttagggtcactttttgactcaaaatatcccctcta 29577166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 52555842 - 52555802
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  52555842 ggtgatttagggacaatttttgacccaaaatcacctctcta 52555802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 44021711 - 44021652
Alignment:
Q  317 tcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    |||| ||||||||| |||| |||| |||| |||| ||||||||||||| |||||||||||    
T  44021711 tcttatccttcatctatcatagaggggtggtttaaggtcaatttttgatccaaaatcacc 44021652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 15730126 - 15730076
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaa 357  Q
    ||||||||||||||  |||||||||| ||||||| |||||||| |||||||    
T  15730126 aaccctagtttctttaccttcatccaccaaagaggggtgattttgggtcaa 15730076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 1124921 - 1124961
Alignment:
Q  334 caaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||| |||||||||||||  |||||||||||||||||||||    
T  1124921 caaaaagaggtgatttagaatcaatttttgacccaaaatca 1124961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 224 - 382
Target Start/End: Complemental strand, 6213125 - 6212967
Alignment:
Q  224 atatttaacatgaatttttagacaatttaataaatattataggaaattgctatttgttgtgagagaatacctcacaacaacataaccctagtttcttctc 323  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6213125 atatttaacatgaatttttagagaatttaataaatattatagaaaattgctatttgttgtgagagaatacctcacaacaacataaccctagtttcttctc 6213026  T
Q  324 cttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  6213025 cttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcacacctcta 6212967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 22345068 - 22344993
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  22345068 aaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcacccctcta 22344993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 30853939 - 30853868
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccc 378  Q
    |||||||||||||||||||||||||| |||||||  |||||| | |||||||||||||||||||||||||||    
T  30853939 aaccctagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcacccc 30853868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 52839385 - 52839456
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  52839385 ctagtttgttctctttcatccattaaagaggggtgatttagggtcaatttttgacccaaaatcacccttcta 52839456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 44514146 - 44514077
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    ||||||| ||||||| ||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  44514146 aaccctaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacc 44514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 14717394 - 14717340
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgac 365  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  14717394 ctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgac 14717340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 38646554 - 38646612
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    |||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||    
T  38646554 ttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaatcaccc 38646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 52839497 - 52839554
Alignment:
Q  325 ttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||    
T  52839497 ttcatccatcaaagaggggtgatttatgatcaatttttgacccaaaatcacccttcta 52839554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 13691907 - 13691839
Alignment:
Q  315 tttcttctccttcatccatcaaagagagg-tgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||| |||||||||  |||||| || || ||||||||||||||||||||||||||||||||||||    
T  13691907 tttcttcttcttcatccactaaagagggggtggtttagggtcaatttttgacccaaaatcacccctcta 13691839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 33703662 - 33703594
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccc 378  Q
    |||||||| ||||||||||||||  |||||| | ||||||| ||||||||||| |||||||||||||||    
T  33703662 cctagttttttctccttcatccactaaagagggatgatttatggtcaattttttacccaaaatcacccc 33703594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 44562870 - 44562830
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44562870 ggtgatttagggtcaatttttgacccaaaatcacccctcta 44562830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 22032229 - 22032170
Alignment:
Q  324 cttcatccatcaaagagaggtgatttagggtcaatttttgaccc-aaaatcacccctcta 382  Q
    ||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  22032229 cttcatccaccaaagagggatgatttagggtcaatttttgacccaaaaatcacccctcta 22032170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 27469884 - 27469821
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||||||||||| |||||||||| |||||| ||||||||| |||||||||| || |||||||||    
T  27469884 ctagtttcttcttcttcatccattaaagaggggtgatttaaggtcaattttcgaaccaaaatca 27469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 45658673 - 45658720
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggt 354  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  45658673 aaccctagtttcttctctttcatccatcaaagaggggtgatttagggt 45658720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 5832220 - 5832266
Alignment:
Q  336 aagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  5832220 aagaggggtgatttagggtcaatttttgaccctaaatcacccctcta 5832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 17579744 - 17579801
Alignment:
Q  325 ttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||| |||||||||| ||||| ||||||||||||||||| ||||||||| |||||||    
T  17579744 ttcattcatcaaagaggggtgacttagggtcaatttttgaaccaaaatcatccctcta 17579801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 29067017 - 29067074
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgaccc 367  Q
    |||||||||||||| |||||  |||||| |||||||||||| ||||||||||||||||    
T  29067017 cctagtttcttctcattcatttatcaaatagaggtgatttatggtcaatttttgaccc 29067074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 9189211 - 9189274
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||| |||||||||  || ||||||| |||| ||||||| ||||||    
T  9189211 ttctccttcatccatcaaagaggggtgatttattgtaaattttttaccctaaatcacacctcta 9189274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 26199560 - 26199630
Alignment:
Q  312 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaat----ttttgacccaaaatcacccct 379  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||||    |||||||||||||||||||||    
T  26199560 tagtttcttctccttcatccaccaaagaggggtga-atagggtcaatttaattttgacccaaaatcacccct 26199630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 46589140 - 46589204
Alignment:
Q  315 tttcttctccttcatcc--atcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    |||||||||||||||||  | ||||||| ||||||||| | |||||||||||| |||||||||||    
T  46589140 tttcttctccttcatccccaccaaagaggggtgatttatgatcaatttttgactcaaaatcaccc 46589204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 630906 - 630866
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  630906 ggtgatttagggtcaatttttgaccctaaatcacccatcta 630866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 10877303 - 10877379
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaa-tttttgacccaaaatcacccctcta 382  Q
    |||| |||||||||||| ||  |||| ||||||| ||||||||| |||||| ||||| |||||||||||| ||||||    
T  10877303 aaccttagtttcttctcttttgtccaccaaagagtggtgatttatggtcaatttttttacccaaaatcacacctcta 10877379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 2875717 - 2875647
Alignment:
Q  312 tagtttcttctccttcatccatcaaaga-gaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||| |||||||||||||| |||| | |||||| |||| |||||||| ||||||| ||||||||||||||    
T  2875717 tagtttattctccttcatccaccaaaaaagaggtg-tttatggtcaattgttgaccccaaatcacccctcta 2875647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 35078044 - 35077971
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||||| |||| || ||||||||| ||||||| | |||| |||||||||||||||||| |||||    
T  35078044 aaccctagttt-ttctccctcattca-caaagagagatgatttatgatcaaattttgacccaaaatcacctctcta 35077971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 1767937 - 1767983
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttaggg 353  Q
    |||| |||||||||||| || ||||||||||||| ||||||||||||    
T  1767937 aaccatagtttcttctcttttatccatcaaagaggggtgatttaggg 1767983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 18889032 - 18889097
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctct 381  Q
    |||||||||||| ||| | ||||||| |||||||||| ||||| ||||| || ||||||||||||||    
T  18889032 tttcttctcctttatctaccaaagaggggtgatttagagtcaa-ttttggccgaaaatcacccctct 18889097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 2350588 - 2350653
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctc 380  Q
    ||||||||| |||||||| ||||||| |||| | |||||||||||||| |||| || ||| |||||    
T  2350588 tttcttctcattcatccaccaaagaggggtggtgtagggtcaatttttaaccccaattcatccctc 2350653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 375
Target Start/End: Complemental strand, 48655187 - 48655154
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||||||| |||||||||||||||||||||||    
T  48655187 ggtgatttagagtcaatttttgacccaaaatcac 48655154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 17920347 - 17920415
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||| |||||| | ||||||||||||  ||||||||| |||||| ||||||| || || ||||||||||    
T  17920347 aaccgtagtttttcctccttcatccactaaagagaggggatttatggtcaatattggatccaaaatcac 17920415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 21326466 - 21326506
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| ||||||||||| | |||||||||||||||    
T  21326466 ggtgatttaggatcaatttttgaacaaaaatcacccctcta 21326506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 33125946 - 33125911
Alignment:
Q  339 agaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33125946 agaggtgatttagggtcaa-ttttgacccaaaatcac 33125911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 34659781 - 34659712
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctc 380  Q
    |||| ||||||||| ||| ||||||||||||||  ||||||||| |    ||||||||||| ||||||||||||    
T  34659781 aaccttagtttcttttccatcatccatcaaagatgggtgatttatg----atttttgacccgaaatcacccctc 34659712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 37685248 - 37685185
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    ||||||||||| ||||||||||| |||||||    |||| || ||||||||||||||||||||||    
T  37685248 cctagtttctt-tccttcatccaccaaagaggaacgattgagagtcaatttttgacccaaaatca 37685185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 37700270 - 37700333
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    ||||||||||| ||||||||||| |||||||    |||| || ||||||||||||||||||||||    
T  37700270 cctagtttctt-tccttcatccaccaaagaggaacgattgagagtcaatttttgacccaaaatca 37700333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 31874042 - 31874117
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31874042 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 31874117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 9269983 - 9270054
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  9269983 ctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcacccctcta 9270054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 10042719 - 10042794
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||  |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  10042719 aaccctagttcattctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctcta 10042794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 16937495 - 16937420
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  16937495 aaccctagtttcttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcatccctcta 16937420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 44295284 - 44295341
Alignment:
Q  317 tcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44295284 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 44295341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 23766704 - 23766770
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    |||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  23766704 ctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcaccc 23766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 36545934 - 36545862
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||| ||||||| | ||||||| ||||||||| |||||||| ||||||||||||    
T  36545934 cctagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcacccctcta 36545862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 9992631 - 9992698
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||| ||| | || | |||||||||||||||||||||||||||||||||||||||||    
T  9992631 tttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcacccctcta 9992698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 15665501 - 15665572
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||  |||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  15665501 ctagtttctttcccttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcacccctcta 15665572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 32061752 - 32061827
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||||||||||||||||| ||||||| |||  ||||||||||||||||||||| ||||||||| ||||    
T  32061752 aaccctaatttcttctccttcatccaccaaagaggggtagtttagggtcaatttttgaccccaaatcacccttcta 32061827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 37658924 - 37658999
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||| ||| | |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  37658924 aaccctaattttttcactttcatccaccaaagaggggtgatttagggtcaatttttgacacaaaatcacccctcta 37658999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 13864317 - 13864386
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    |||||||||||||||||||||||  ||||||||| ||||||||| |||||| |||||| |||||||||||    
T  13864317 aaccctagtttcttctccttcatttatcaaagaggggtgatttaaggtcaacttttgagccaaaatcacc 13864386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 14327445 - 14327510
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctc 380  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||||||| || |||||||||    
T  14327445 tttcttctccttcatccaccaaagaggggtggtttagggtcaatttttgaccccaattcacccctc 14327510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 37719809 - 37719877
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||| | ||||||||    
T  37719809 aaccctagtttcttctccttcatccaccaaggacgggtgatttagggtcaatttttgaactaaaatcac 37719877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 32256875 - 32256802
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaat-ttttgacccaaaatcacccctcta 382  Q
    |||||||| |||  ||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  32256875 cctagttttttcatcttcatccaccaaagaggggtgatttagggtcaatttttttacccaaaatcacccctcta 32256802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 26937486 - 26937558
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||| |||||| ||||||| ||| ||||||||| || ||||||| ||||||||||||||||    
T  26937486 cctagtttcttatcctgcatccaccaaagaggggttatttagggttaagttttgactcaaaatcacccctcta 26937558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 1215483 - 1215420
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||| ||||  |||||| ||||||||||||| |||||||| |||||    
T  1215483 ttctccttcatccatcaaagagcggtggattagggccaatttttgaccccaaatcaccgctcta 1215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 14115944 - 14115875
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctct 381  Q
    |||||| |||||| |||||||| ||||||  ||||||||||| ||||||||||||||||||||| ||||||    
T  14115944 ctagttacttctctttcatccaccaaagatgggtgatttagg-tcaatttttgacccaaaatcatccctct 14115875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 284623 - 284566
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaat 372  Q
    ||||||||| ||||||||  |||||||||||||||| | |||||||||||||||||||    
T  284623 tttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaat 284566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 631254 - 631311
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaat 372  Q
    ||||||||| ||||||||  |||||||||||||||| | |||||||||||||||||||    
T  631254 tttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaat 631311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 817066 - 817123
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaat 372  Q
    ||||||||| ||||||||  |||||||||||||||| | |||||||||||||||||||    
T  817066 tttcttctcattcatccactaaagagaggtgatttatgatcaatttttgacccaaaat 817123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 31147944 - 31147891
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaat 372  Q
    ||||||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  31147944 ttctccttcattcatcaaagaaggatgatttagggtcaatttttgacccaaaat 31147891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 31713187 - 31713135
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttg 363  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||||| |||||    
T  31713187 ctagtttcttcaccttcacccatcaaagaggggtgatttagggtcaacttttg 31713135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 3680883 - 3680934
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaattttt 362  Q
    ||||||||||||| |||||||| ||||||| |||||||||| ||||||||||    
T  3680883 ctagtttcttctctttcatccaccaaagaggggtgatttagagtcaattttt 3680934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 14531056 - 14530989
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||| | ||| ||||||||| |||| ||||||||||||||||||| | ||||||||| ||||    
T  14531056 tttcttctccattatcgatcaaagaggggtggtttagggtcaatttttgactccaaatcacccttcta 14530989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 6833454 - 6833512
Alignment:
Q  325 ttcatccatcaaagagaggtgatttagggtcaatttttgaccc-aaaatcacccctcta 382  Q
    ||||||||| ||||| |||||||||||| | |||||||||||| |||||||||||||||    
T  6833454 ttcatccataaaagataggtgatttaggattaatttttgacccaaaaatcacccctcta 6833512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 7269595 - 7269545
Alignment:
Q  332 atcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  7269595 atcaaatagaggtgatttagagtcaatttttgaccctaaatcacccttcta 7269545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 18190999 - 18190931
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    ||||||| |||||| |||||||||||  |||||| |||| ||||||||||||||||||| | ||||||||    
T  18190999 aaccctaatttcttttccttcatccactaaagag-ggtggtttagggtcaatttttgactccaaatcacc 18190931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 8054929 - 8054889
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  8054929 ggtgatttagggtcaatttttgacccaaaattatccctcta 8054889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 32920613 - 32920685
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| |||||||| ||| ||||| ||||||| |||| |||||||||||| |||| ||| |||||||| |||||    
T  32920613 cctaatttcttcttctttatccaccaaagaggggtggtttagggtcaatctttgcccctaaatcaccgctcta 32920685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 7281279 - 7281208
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||| ||||| |||||  ||||||| ||||| |||| ||||| |||| ||||||||| ||||    
T  7281279 ctagtttcttctccctcatctatcaagtagaggtgttttagagtcagtttttaaccctaaatcacccatcta 7281208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 31595117 - 31595159
Alignment:
Q  264 aggaaattgctatttgttgtgagagaatacctcacaacaacat 306  Q
    ||||||||||||||||| | ||||||||||||||| |||||||    
T  31595117 aggaaattgctatttgtcgcgagagaatacctcacgacaacat 31595159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 17989041 - 17988988
Alignment:
Q  132 attttatatgaatatctttaaataagaaatattatttcagtttaaatagactaa 185  Q
    |||||| ||||| ||||||||||||| ||| | |||| ||||||||||||||||    
T  17989041 attttacatgaacatctttaaataagcaatgtaatttaagtttaaatagactaa 17988988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 22738594 - 22738643
Alignment:
Q  135 ttatatgaatatctttaaataagaaatattatttcagtttaaatagacta 184  Q
    ||||||||| ||||||||||||| ||||| || | |||||||||||||||    
T  22738594 ttatatgaacatctttaaataaggaatatgatctaagtttaaatagacta 22738643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 37129814 - 37129761
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaattt 360  Q
    ||||||||||| |||||||||||||| ||| |||  ||||||| ||||||||||    
T  37129814 aaccctagtttattctccttcatccaccaaggaggtgtgattttgggtcaattt 37129761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 5989624 - 5989656
Alignment:
Q  343 gtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||||||||||||||||| ||||||||||||    
T  5989624 gtgatttagggtcaatttttaacccaaaatcac 5989656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 1165552 - 1165477
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1165552 aaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 1165477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 20201214 - 20201139
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20201214 aaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 20201139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 20203396 - 20203321
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20203396 aaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 20203321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 43029641 - 43029716
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||    
T  43029641 aaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcacccctcta 43029716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 50519748 - 50519823
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||    
T  50519748 aaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcacccctcta 50519823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 41882562 - 41882489
Alignment:
Q  309 ccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  41882562 ccctagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattacccctcta 41882489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 22286903 - 22286830
Alignment:
Q  309 ccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  22286903 ccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattacccctcta 22286830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 35501911 - 35501840
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  35501911 cctagtttcttctccttcatccaccaaagag-ggtgatttagggttaatttttgacccaaaatcacccctcta 35501840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 22844009 - 22844084
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| ||||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  22844009 aaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcacccctcta 22844084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 40462151 - 40462076
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  40462151 aaccctagtttcttctctttcatccaccaaagagtggtgatttagagtcaaattttgacccaaaatcacccctcta 40462076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 21803488 - 21803563
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||| | |||||||  |||||| || ||||||||||||||||||||||||||||||    
T  21803488 aaccctagtttcttctccttcatctaccaaagaggagtgattcagtgtcaatttttgacccaaaatcacccctcta 21803563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 42106069 - 42106144
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  42106069 aaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcacccatcta 42106144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 20251609 - 20251685
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtc-aatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||| | ||||| |||||||||||||| ||||    
T  20251609 aaccctagtttattctccttcatccaccaaagaggggtgatttagggtcgatttttttacccaaaatcacccttcta 20251685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 1220363 - 1220296
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||| | ||||||||| ||||||||||| |||||||||||  ||||||||||||||||    
T  1220363 tttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctcta 1220296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 1806616 - 1806541
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| || ||||| ||||||||| ||||||| |||| |||||||||||||||||| || ||||||||||||||    
T  1806616 aaccctacttccttcttcttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcacccctcta 1806541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 37051590 - 37051657
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||| |||||||| ||||||| | ||||||||||||||||||||||||  |||||||||||||    
T  37051590 tttcttctctttcatccaccaaagagggatgatttagggtcaatttttgaccctgaatcacccctcta 37051657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 53426766 - 53426837
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||| || |||||||||||||||  | ||||||||||||||||||| || ||||||||||||||||    
T  53426766 ctagtttcttttctttcatccatcaaagatggatgatttagggtcaattttttacgcaaaatcacccctcta 53426837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 2598039 - 2598116
Alignment:
Q  305 ataaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||| ||||||||||  |||||||||| |||| ||||||||||||  ||| ||||||||||||||||||| ||||||    
T  2598039 ataactctagtttctttgccttcatccaccaaaaagaggtgatttaaagtcgatttttgacccaaaatcactcctcta 2598116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 913474 - 913399
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||||  ||||||||| ||||||| ||| ||| |  ||||||||||||||||||||||||||||||    
T  913474 aaccttagtttcttcatcttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcacccctcta 913399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 25374221 - 25374151
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||| |||||||| || ||||||  ||||||||||||| ||||||||||| |||||||||||||||    
T  25374221 ctagtttcttttccttcattca-caaagaagggtgatttagggttaatttttgacctaaaatcacccctcta 25374151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 43839672 - 43839613
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacc 366  Q
    ||||||||||||||||||||||| ||  |||||  |||||||||||||||||||||||||    
T  43839672 aaccctagtttcttctccttcattcactaaagatgggtgatttagggtcaatttttgacc 43839613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 43242777 - 43242839
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    ||||||||||||||| ||||||| |  ||||||||||||||| |||||||| |||||||||||    
T  43242777 tttcttctccttcattcatcaaataagggtgatttagggtcagtttttgacacaaaatcaccc 43242839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 50460160 - 50460222
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    |||||||| ||||||||||||||||| | ||||||| ||||||||||||||  ||||||||||    
T  50460160 tttcttcttcttcatccatcaaagagggatgatttaaggtcaatttttgacataaaatcaccc 50460222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 25939615 - 25939564
Alignment:
Q  322 tccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  25939615 tccttcatccatcaaa-ag-ggtgatttagggtcaatttttgacccaaaatcac 25939564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 47914736 - 47914688
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaat 358  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  47914736 cctaatttcttctccttcatccaccaaagaggggtgatttagggtcaat 47914688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 11846573 - 11846648
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||||||||||||| | |||||  ||||| |||||| ||||||||| | |||||||||| ||||    
T  11846573 aaccctagttttttctccttcatccacctaagaggagtgatatagggttaatttttgagcgaaaatcacccgtcta 11846648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 40796991 - 40797065
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||  |||| |||| |||| || ||||||||||||| || |||||| |||||||||||||||||    
T  40796991 aaccctagtttcttcatcttcctccaccaaaaaggggtgatttagggttaa-ttttgagccaaaatcacccctcta 40797065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 29776832 - 29776782
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaa 357  Q
    |||| |||||| |||||||||||||| ||||||| ||||||||||||||||    
T  29776832 aaccttagttttttctccttcatccaccaaagaggggtgatttagggtcaa 29776782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 33978072 - 33978010
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatc 373  Q
    ||||||||| ||||||||||||  ||| |  ||||||||| ||||||||||||||||||||||    
T  33978072 ctagtttctcctccttcatccacaaaaaaatggtgatttaaggtcaatttttgacccaaaatc 33978010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 45664217 - 45664262
Alignment:
Q  337 agagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||    
T  45664217 agaggggtgatttaggatcaaattttgacccaaaatcacccctcta 45664262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 27831082 - 27831144
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||| ||||||| |||||||| ||||||| |||||||| |||||||||| ||||    
T  27831082 ttcttcttcatccaccaaagaggggtgatttggggtcaa-ttttgacctaaaatcacccatcta 27831144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 4019585 - 4019634
Alignment:
Q  332 atcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||| |||||    
T  4019585 atcaaagaggggtgatttagggtcaa-ttttgactcaaaatcacctctcta 4019634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 31132971 - 31133053
Alignment:
Q  132 attttatatgaatatctttaaataagaaatattatttcagtttaaatagactaac-aactaatagataaaagagattaaactc 213  Q
    |||| ||||||| ||||||||||||| ||| | || | |||||||||| |||| | ||||||||||| || ||||||||||||    
T  31132971 atttcatatgaacatctttaaataagtaatgtgatctaagtttaaatatactatcaaactaatagatcaatgagattaaactc 31133053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 7656623 - 7656568
Alignment:
Q  312 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaa 370  Q
    |||||||||  |||||||| |||||   ||||| |||||||||||||||||||||||||    
T  7656623 tagtttctttaccttcatctatcaa---gaggtaatttagggtcaatttttgacccaaa 7656568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 14741470 - 14741438
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaaga 339  Q
    ||||||||||| |||||||||||||||||||||    
T  14741470 aaccctagttttttctccttcatccatcaaaga 14741438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 3390390 - 3390465
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3390390 aaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 3390465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 25771403 - 25771478
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25771403 aaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctcta 25771478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 6089851 - 6089926
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  6089851 aaccctaatttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctcta 6089926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 25516452 - 25516527
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  25516452 aaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcacccctcta 25516527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 27024291 - 27024220
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  27024291 ctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcacccctcta 27024220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 27191491 - 27191416
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  27191491 aaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctcta 27191416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 27841305 - 27841230
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  27841305 aaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctcta 27841230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 40125347 - 40125422
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  40125347 aaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcacccctcta 40125422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 41176820 - 41176895
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  41176820 aaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccacccatcta 41176895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 44167863 - 44167790
Alignment:
Q  309 ccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||||||||||||||    
T  44167863 ccctagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcacccctcta 44167790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 29812755 - 29812696
Alignment:
Q  323 ccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29812755 ccttcatccatcaaagagaggtgatttagggtcaatttttgacacaaaatcacccctcta 29812696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 5930391 - 5930456
Alignment:
Q  317 tcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  5930391 tcttctccttcatccaccaaagagaggtgatttagggttaatttttgacccaaaatcatccctcta 5930456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 3602946 - 3603018
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||| ||||||| ||||||||||||||||    
T  3602946 cctagtttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcacccctcta 3603018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 10588999 - 10589071
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||  ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||    
T  10588999 cctagtttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcacccctcta 10589071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 36507891 - 36507963
Alignment:
Q  309 ccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctct 381  Q
    |||||||||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||| ||||    
T  36507891 ccctagtttcttctccttcatccaccaaagaatggtgacttagggtcaatttttgacccaaaatcacctctct 36507963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 37883619 - 37883686
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||    
T  37883619 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttaatccaaaatcacccctcta 37883686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 43566835 - 43566904
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    |||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  43566835 aaccatagtttcttctccttcatccaccaaagaggggtga-ttagggtcaatttttgacccaaaatcaccc 43566904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 3464925 - 3464986
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  3464925 tttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcacc 3464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 42105908 - 42105833
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||| || ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  42105908 aaccctaatttattttccttcatccaccaaagaggggtgctttagggtcaatttttgacccaaaatcaccactcta 42105833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 26491261 - 26491333
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccct 379  Q
    |||| ||||||||||||| ||||||| ||||||| ||| ||||| | ||||||||||||||||||||||||||    
T  26491261 aaccttagtttcttctccatcatccaccaaagaggggtaatttaagttcaatttttgacccaaaatcacccct 26491333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 374
Target Start/End: Complemental strand, 9715700 - 9715634
Alignment:
Q  308 accctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||||||||| ||||| ||||||||||||| |  ||||||||||||||||||||||| |||||||||    
T  9715700 accctagttttttctctttcatccatcaaaaatgggtgatttagggtcaatttttgatccaaaatca 9715634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 25623201 - 25623131
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    |||||||||||||| | |||||| |||||||||| |||||||||   ||||||||||||||||||||||||    
T  25623201 aaccctagtttctttttcttcatacatcaaagaggggtgatttattatcaatttttgacccaaaatcaccc 25623131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 34479918 - 34479984
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    ||||||||||||| |||||||||||||||  | |||| |||||||||||||| ||||||||||||||    
T  34479918 ctagtttcttctcattcatccatcaaagatggatgatatagggtcaattttttacccaaaatcaccc 34479984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 41841911 - 41841980
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgaccc-aaaatcacccct 379  Q
    ||||||| ||||||||||||||||| |||| | ||||||| |||||||||||||||| ||||||||||||    
T  41841911 ctagttttttctccttcatccatcatagagggttgatttatggtcaatttttgacccaaaaatcacccct 41841980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 44951463 - 44951512
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatt 359  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  44951463 cctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatt 44951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 7640477 - 7640437
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7640477 ggtgatttagggtcaatttttgacccaaaatcacccctcta 7640437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 15674102 - 15674055
Alignment:
Q  335 aaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  15674102 aaagaggggtgatttagggtcaatttttgacccaaaatcactcctcta 15674055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 19581159 - 19581084
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| |||||| ||| ||||||||||  |||||| |||||||| |||||||||||| || ||||||||||||||||    
T  19581159 aaccttagttttttcaccttcatccactaaagaggggtgattttgggtcaatttttaacacaaaatcacccctcta 19581084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 16720958 - 16720916
Alignment:
Q  322 tccttcatccatcaaagagaggtgatttagggtcaatttttga 364  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  16720958 tccttcatccatcagagagaggtgatttagggtcaatttttga 16720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 19953355 - 19953405
Alignment:
Q  320 tctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaa 370  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  19953355 tctccatcatccatcaaagaggggtgatttatggtcaatttttgacccaaa 19953405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 25237478 - 25237413
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    ||||||| |||||||||||| || |||||| |||||||||| ||||| |||||| |||||||||||    
T  25237478 ctagtttattctccttcatctattaaagaggggtgatttagagtcaacttttgatccaaaatcacc 25237413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 31263105 - 31263052
Alignment:
Q  312 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgac 365  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  31263105 tagttttttcttcttcatccatcaaagaggggtgatttagggtcaatctttgac 31263052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 4878847 - 4878795
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttg 363  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||||| |||||    
T  4878847 ctagtttcttcaccttcacccatcaaagaggggtgatttagggtcaacttttg 4878795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 5071515 - 5071451
Alignment:
Q  318 cttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||| ||| |||| |||| |||||||||||||||  ||||||||| ||||    
T  5071515 cttctccttcatccatcaacgaggggtggtttatggtcaatttttgaccttaaatcacccttcta 5071451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 44441356 - 44441412
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    ||||| |||||||||||||||  ||||| |||| |||||||||||||||||||||||    
T  44441356 ttctctttcatccatcaaagatgggtgacttagagtcaatttttgacccaaaatcac 44441412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 35353633 - 35353680
Alignment:
Q  330 ccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||    
T  35353633 ccatcaaagaggggtggtttagggtcaatttttgaccccaaatcaccc 35353680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 16880087 - 16880041
Alignment:
Q  335 aaagagaggtgatttagggtcaatttttgacccaaaatcacccctct 381  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||    
T  16880087 aaagaggggtgatttttggtcaatttttgacccaaaatcacccctct 16880041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 3398137 - 3398060
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaaga--gaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||| |||| ||||||||| ||||||  | |||| |||| |||||||||||||||| | ||||||||||||    
T  3398137 aaccctatttttttcttcttcatccaccaaagaagggggtggtttaaggtcaatttttgaccccagatcacccctcta 3398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 13268549 - 13268602
Alignment:
Q  324 cttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccc 378  Q
    |||||||||| |||||| ||||||||| ||||| ||||||| |||||||||||||    
T  13268549 cttcatccattaaagaggggtgatttatggtca-tttttgaaccaaaatcacccc 13268602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 337
Target Start/End: Original strand, 32909034 - 32909064
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaa 337  Q
    |||||||||||||||||||||||||||||||    
T  32909034 aaccctagtttcttctccttcatccatcaaa 32909064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 17037777 - 17037737
Alignment:
Q  335 aaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||| ||||||||  ||||||||||||||||||||||||    
T  17037777 aaagaggggtgatttttggtcaatttttgacccaaaatcac 17037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 25067830 - 25067873
Alignment:
Q  337 agagaggtgatttagggtcaatttttgaccc-aaaatcacccctc 380  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  25067830 agagaggtgatttagggtcaa-ttttgacccaaaaatcacccctc 25067873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 298 - 382
Target Start/End: Complemental strand, 34894081 - 34893997
Alignment:
Q  298 caacaacataaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  34894081 caacatcaaaaccctagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcacccctcta 34893997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 6887330 - 6887259
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  6887330 ctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcacccctcta 6887259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 31645787 - 31645862
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  31645787 aaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcacccctcta 31645862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 2415358 - 2415433
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  2415358 aaccctagtttaatttccttcatccatcaaagataggtgatttagggtcaatttttgacccaaaatcacccttcta 2415433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 41358000 - 41358067
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccc 378  Q
    |||||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  41358000 ctagtttcttttccttcatagatcaaagataggtgatttagggtcaatttttgacccaaaatcacccc 41358067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 28618564 - 28618637
Alignment:
Q  309 ccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||   ||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  28618564 ccctagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcacccctcta 28618637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 41554447 - 41554519
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||| ||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  41554447 cctaatttcttcaccttcattcatcaaagaggggtgatttaggatcaatttttgatccaaaatcacccctcta 41554519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 6648069 - 6647994
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| || ||||||||||||||||||| || |||||| |||||| ||||||||||||||||| ||||||    
T  6648069 aaccctagtttattttccttcatccatcaaagaggggcgatttatggtcaaattttgacccaaaatcactcctcta 6647994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 33486718 - 33486651
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  33486718 tttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacccatcta 33486651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 18472874 - 18472806
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||||||||| ||||||| |   |||||||||||||||||||||||||||||||||||||    
T  18472874 ctagtttcttcaccttcatccaccaaagaggg---atttagggtcaatttttgacccaaaatcacccctcta 18472806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 9035101 - 9035029
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| | |||||||||||| |||||||| |||||||    
T  9035101 cctagtttcttctccttcatctatcaatgaggggtgatttatgatcaatttttgactcaaaatcatccctcta 9035029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 37424950 - 37425026
Alignment:
Q  307 aaccctagttt-cttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| ||| ||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||| ||||||    
T  37424950 aaccctagttttcttttccttcatccaccaaagaggggtgatttatggtcaatttctgacccaaaatcacgcctcta 37425026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 8812304 - 8812233
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||  ||||||||| |||| || |||||| |||||||||||||| |||||||||||||||||||    
T  8812304 ctagtttcttcatcttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcacccctcta 8812233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 41988146 - 41988217
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||| | ||||||||| ||||||||||| |||||||||||  ||||||| ||||||||    
T  41988146 ctagtttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcgcccctcta 41988217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 4070518 - 4070586
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctct 381  Q
    ||||||||||||| |||||||| |||| || ||||||||||||||| ||||||||||||||||||||||||    
T  4070518 ctagtttcttctc-ttcatccaccaaaaaggggtgatttagggtca-tttttgacccaaaatcacccctct 4070586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 19646188 - 19646122
Alignment:
Q  316 ttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||| | ||||||| |||| |||| ||||||| |||||||||||||||||||||||    
T  19646188 ttcttctccttcatcgaccaaagaggggtggtttaaggtcaatgtttgacccaaaatcacccctcta 19646122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 34950434 - 34950510
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca-cccctcta 382  Q
    ||||||| ||| ||||| |||||||| |||||||||||| |||| |||||||| |||||||||||||| ||||||||    
T  34950434 aaccctacttttttctcattcatccaccaaagagaggtggtttatggtcaattcttgacccaaaatcatcccctcta 34950510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 15710502 - 15710575
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaa--tttttgacccaaaatcacccctcta 382  Q
    |||||||||| ||||||||||||||||||  ||||||||| ||||||  ||||| | |||||||||||||||||    
T  15710502 ctagtttcttttccttcatccatcaaagatgggtgatttatggtcaattttttttatccaaaatcacccctcta 15710575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 29310476 - 29310430
Alignment:
Q  336 aagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcacccctcta 29310430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 41063547 - 41063484
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||| |||||||||||||||||||||||||| ||||| | |||||||||||||||| |||||||||    
T  41063547 cctaatttcttctccttcatccatcaaagag-ggtga-tcagggtcaatttttgactcaaaatcac 41063484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 36439907 - 36439989
Alignment:
Q  132 attttatatgaatatctttaaataagaaatattatttcagtttaaatagactaac-aactaatagataaaagagattaaactc 213  Q
    |||| |||| || ||||||||||||| ||| |||| | ||||||||||||||||| |||||||| || ||| |||||||||||    
T  36439907 atttcatataaacatctttaaataagcaatgttatctaagtttaaatagactaacgaactaatatatcaaatagattaaactc 36439989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 39963933 - 39964010
Alignment:
Q  137 atatgaatatctttaaataagaaatattatttcagtttaaatagactaac-aactaatagataaaagagattaaactc 213  Q
    ||||||| ||||||||||||| ||||| || | ||||||||||||||||| |||||||| || ||  |||||||||||    
T  39963933 atatgaacatctttaaataagtaatataatctaagtttaaatagactaacgaactaataaatcaactagattaaactc 39964010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 32390777 - 32390737
Alignment:
Q  314 gtttcttctccttcatccatcaaagagaggtgatttagggt 354  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  32390777 gtttcttctccttcatccatcaaagagaggtggttttgggt 32390737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 40565293 - 40565236
Alignment:
Q  325 ttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||| ||||||| |||| ||||||||  ||||||||||| |||||||| |||||    
T  40565293 ttcatccaccaaagaggggtggtttagggttgatttttgaccccaaatcacctctcta 40565236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 374
Target Start/End: Complemental strand, 4727045 - 4727017
Alignment:
Q  346 atttagggtcaatttttgacccaaaatca 374  Q
    |||||||||||||||||||||||||||||    
T  4727045 atttagggtcaatttttgacccaaaatca 4727017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 10924222 - 10924186
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtga 346  Q
    |||| |||||||||||||||||||||||||| |||||    
T  10924222 cctaatttcttctccttcatccatcaaagaggggtga 10924186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 24470353 - 24470428
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  24470353 aaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctcta 24470428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 24475301 - 24475376
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  24475301 aaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctcta 24475376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 40775225 - 40775297
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccct 379  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  40775225 aaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcacccct 40775297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 47749692 - 47749767
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  47749692 aaccctaatttcttctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctcta 47749767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 49166885 - 49166960
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  49166885 aaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcacccctcta 49166960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 8611778 - 8611703
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||  |||||||||||| ||||||||||||    
T  8611778 aaccctagtttcttctccttcatccacgaaagaggggtgatttagggtctctttttgacccaatatcacccctcta 8611703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 28015314 - 28015389
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||| ||| ||||||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  28015314 aaccctaattttttcaccttcatccactaaagaggggtgatttagggtcaatttttgatccaaaatcacccctcta 28015389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 14734194 - 14734131
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||||    
T  14734194 ttcttcttcatccatcaaagaagggtggtttagggtcaatttttgaccccaaatcacccctcta 14734131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 24045367 - 24045313
Alignment:
Q  328 atccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  24045367 atccatcaaagagtggtgatttaaggtcaatttttgacccaaaatcacccgtcta 24045313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 29804823 - 29804757
Alignment:
Q  316 ttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||| || |||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  29804823 ttcttttcattcatccaccaaagaggggtggtttagggtcaatttttgaccccaaatcacccctcta 29804757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 35141904 - 35141834
Alignment:
Q  312 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||| ||||||||||| || ||||||  ||||||||||||||||||||||||| |||||||||| ||||    
T  35141904 tagtttattctccttcattcaccaaagaagggtgatttagggtcaatttttgaccaaaaatcacccttcta 35141834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 5025213 - 5025137
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaa-tttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||  ||||||||| || |||| |||||||| | ||||| |||||||||||||||||||||||||    
T  5025213 aaccctagtttcttcatcttcatccaccagagaggggtgattttgagtcaattttttgacccaaaatcacccctcta 5025137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 21329448 - 21329377
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||| || ||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  21329448 cctaatttcttctcatttatccaccaaagaggggtggtttagggtcaatttttgaccc-aaatcacccctcta 21329377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 33530622 - 33530549
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||| | ||||||| ||||||||| ||||||||||||||||  |||||||||||| ||||||||||    
T  33530622 aaccatagtttcttttacttcatctatcaaagaggggtgatttagggtcaa--tttgacccaaaaccacccctcta 33530549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 38649511 - 38649439
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||| |||||||| |  ||| || |||||||||| ||||||||||||||||||||||||||||||    
T  38649511 cctaatttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcacccctcta 38649439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 8319271 - 8319342
Alignment:
Q  307 aaccctagttt-cttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    ||||||||||| ||||||||| ||||| |||||||  |||||||| |||||| |||||||||||||||||||    
T  8319271 aaccctagttttcttctcctttatccaccaaagaggagtgatttatggtcaacttttgacccaaaatcaccc 8319342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 25855380 - 25855301
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagag----aggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| |||||| |||||||||||||| |||||||     ||||||||||||||||||||||| ||||||||| |||||||    
T  25855380 aaccttagttttttctccttcatccaccaaagaggggtgggtgatttagggtcaatttttgatccaaaatcatccctcta 25855301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 35135339 - 35135273
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatc 373  Q
    |||||||| || |||||||||||||||| |||||  ||||||||| |||||||||||||| ||||||    
T  35135339 aaccctagattattctccttcatccatctaagaggagtgatttagagtcaatttttgacctaaaatc 35135273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 36350166 - 36350246
Alignment:
Q  304 cataaccctagtttcttctccttcatccatcaaagagaggtgatttagggtca--atttttgacccaaaatcacccctcta 382  Q
    |||||||||| ||||||||||||||||||| |||||| | |||||| |||| |   ||||| |||||||||||||||||||    
T  36350166 cataaccctaatttcttctccttcatccattaaagagggttgatttggggtaattttttttaacccaaaatcacccctcta 36350246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 23177734 - 23177662
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaat-ttttgacccaaaatcacccctcta 382  Q
    ||||||||||||||||||||||| |||||   |||||||| ||||||| |||| |||||||||||| ||||||    
T  23177734 ctagtttcttctccttcatccattaaagatgagtgatttaaggtcaatttttttacccaaaatcactcctcta 23177662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 23732541 - 23732481
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||||  |||||| |||||||||| ||||||||| |||||||||||||| |||||||||    
T  23732541 tttcttcaacttcattcatcaaagaggggtgatttaaggtcaatttttgactcaaaatcac 23732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 43807275 - 43807231
Alignment:
Q  338 gagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||    
T  43807275 gagaggtgatttatggtcaatttttgacccaaaatcacctctcta 43807231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 16263369 - 16263420
Alignment:
Q  331 catcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||| |||||    
T  16263369 catcaaagaggggtgatttaggatcaatttttgatccaaaatcacctctcta 16263420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 41748653 - 41748582
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||  |||||| ||  ||||||| |||||||| ||||||||||||| |||||||||| ||||||    
T  41748653 ctagtttcttcatcttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcactcctcta 41748582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 35661494 - 35661532
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatt 348  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  35661494 cctagtttcttctccttcatccatcaaagaggggtgatt 35661532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 30992944 - 30992904
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  30992944 ggtgatttaaggttaatttttgacccaaaatcacccctcta 30992904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 338
Target Start/End: Complemental strand, 135261 - 135230
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaag 338  Q
    ||||||||||||||||||||||||||||||||    
T  135261 aaccctagtttcttctccttcatccatcaaag 135230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 2528300 - 2528339
Alignment:
Q  324 cttcatccatcaaagagaggtgatttagggtcaatttttg 363  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  2528300 cttcatccatcaaagaggggtggtttagggtcaatttttg 2528339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 29805035 - 29804976
Alignment:
Q  316 ttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    ||||| || |||| ||| ||||||| |||| ||||||||||||||||||||| |||||||    
T  29805035 ttcttttcattcaaccaccaaagaggggtggtttagggtcaatttttgaccccaaatcac 29804976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 34595806 - 34595731
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||||| | ||||||||| |||||||  ||| ||||||||||||||| ||| | |||||||| |||||    
T  34595806 aaccctaatttctttttcttcatccaccaaagaggagtggtttagggtcaattttcgactctaaatcaccactcta 34595731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 37399574 - 37399629
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaattttt 362  Q
    ||||||| |||||||| ||||||||| ||||||  ||||||||||||| |||||||    
T  37399574 aaccctaatttcttcttcttcatccaccaaagacgggtgatttagggttaattttt 37399629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 4028157 - 4028202
Alignment:
Q  332 atcaaagagaggtgatttagggtcaatttttgacccaaaatcacccc 378  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||    
T  4028157 atcaaagagatgtgatttagggttaa-ttttgacccaaaatcacccc 4028202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 4529903 - 4529949
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgac 365  Q
    ||||||||||| |||||||||||||||||||  ||||| ||||||||    
T  4529903 ttctccttcattcatcaaagagaggtgattttaggtcattttttgac 4529949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 25685286 - 25685368
Alignment:
Q  132 attttatatgaatatctttaaataagaaatattatttcagtttaaatagactaac-aactaatagataaaagagattaaactc 213  Q
    |||| |||||||||| |||||||||| ||||| || | ||||||||||||||| | |||||||| || ||  |||||||||||    
T  25685286 atttcatatgaatatatttaaataagcaatatgatctaagtttaaatagactagcgaactaatatatcaattagattaaactc 25685368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 46918363 - 46918432
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccct 379  Q
    |||||||| ||||  ||||| ||||||||||   |||||||| |||||||||||||||| |||| |||||    
T  46918363 cctagtttattcttgttcattcatcaaagaggtatgatttagagtcaatttttgacccataatcgcccct 46918432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 47156389 - 47156429
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||| ||||||||||||| ||||||||| |||||||    
T  47156389 ggtgatttaaggtcaatttttgatccaaaatcatccctcta 47156429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 16913286 - 16913361
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  16913286 aaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcacccctcta 16913361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 4663976 - 4663901
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||||||    
T  4663976 aaccctaatttcttctccttcatccaccaaagaggggtgattgtgggtcaatttttgacccaaaatcacccctcta 4663901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 12576631 - 12576559
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||||||||||  |||||| |||||||||||||||||||||||||| ||||||||||||||    
T  12576631 cctagtttcttttccttcatccacgaaagaggggtgatttagggtcaatttttgaccctaaatcacccctcta 12576559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 891551 - 891618
Alignment:
Q  312 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccct 379  Q
    |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||    
T  891551 tagtttcttctccttcatccattaaagagaggtgattaagggtcgatttttgacccaaaattacccct 891618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 10744541 - 10744612
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||||||||| ||||||  |||||||||||||||| ||||||||||||||||| ||||||    
T  10744541 ctagtttcttcaccttcatccaccaaagatgggtgatttagggtcaacttttgacccaaaatcactcctcta 10744612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 15128299 - 15128230
Alignment:
Q  312 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||||||| |||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||    
T  15128299 tagtttcttctacttcatccatcaaagatagatgattta-ggtcaatttttgtcccaaaatcacccctcta 15128230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 7049217 - 7049278
Alignment:
Q  319 ttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctc 380  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  7049217 ttctccttcatccaccaaagaggggtgatttagggtcaacttttgactcaaaatcacccctc 7049278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 8644203 - 8644272
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    |||||||||||| | |||||||||||||||| |  ||||||||||||||||||||||||| |||||||||    
T  8644203 aaccctagtttcatttccttcatccatcaaaaatgggtgatttagggtcaatttttgaccaaaaatcacc 8644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 32457604 - 32457679
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| |||||| |||||||||||| |  |||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  32457604 aaccttagttttttctccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcacccatcta 32457679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 32574411 - 32574486
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||||||||||||||||| |||| | ||||| ||||| |||||||||||||||||||| | |||||||    
T  32574411 aaccctattttcttctccttcatccaccaaatataggtgttttagagtcaatttttgacccaaaattaaccctcta 32574486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 19759781 - 19759821
Alignment:
Q  342 ggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19759781 ggtgatttagggtcaatttttgacccaaaatcacccctcta 19759821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 32804253 - 32804327
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||| ||||| ||||||||  | ||||  |||||||||||||||||||||||||||||||||||| ||||    
T  32804253 aaccctagttacttctacttcatccc-ctaagatgggtgatttagggtcaatttttgacccaaaatcacccatcta 32804327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 32257945 - 32258009
Alignment:
Q  310 cctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||||||||||| |||||||||||||||| | |||| || |||||||||||||||| |||||||    
T  32257945 cctagtttcttctc-ttcatccatcaaagagggatgatgtaaggtcaatttttgacccgaaatcac 32258009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 34020582 - 34020643
Alignment:
Q  313 agtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||||||||| ||||||| | ||||||| |||| ||||||||||||||||||||||| ||||    
T  34020582 agtttcttcttcttcatctaccaaagaggggtggtttagggtcaatttttgacccaacatca 34020643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 20844965 - 20845041
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagagg-tgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||| ||||||||||||||| ||| | ||||||| || | ||| | |||||||||||||||||||||||||||||||    
T  20844965 aaccttagtttcttctcctttatctaccaaagagggggtaattcaaggtcaatttttgacccaaaatcacccctcta 20845041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 33194563 - 33194631
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||| ||||||||||| ||||||||||  || |  ||||||||||||||||||||||| ||||||||||    
T  33194563 aaccatagtttcttcttcttcatccattcaatattggtgatttagggtcaatttttgatccaaaatcac 33194631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 31747926 - 31747977
Alignment:
Q  315 tttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacc 366  Q
    ||||||||| |||||||  ||||||||| |||||||||||||||||||||||    
T  31747926 tttcttctcattcatccgccaaagagagatgatttagggtcaatttttgacc 31747977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 27575179 - 27575113
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 377  Q
    ||||||| ||||| |||||||||||||||| | |||| |||  ||||||||||||| ||||||||||    
T  27575179 ctagtttattctctttcatccatcaaagagggatgatatagaatcaatttttgacctaaaatcaccc 27575113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 548985 - 548946
Alignment:
Q  343 gtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  548985 gtgatataaggtcaatttttgacccaaaatcacccctcta 548946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 13234233 - 13234194
Alignment:
Q  337 agagaggtgatttagggtcaatttttgacccaaaatcacc 376  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  13234233 agaggggtgatttagggtcaatttttgacctaaaatcacc 13234194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 9804 - 9729
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  9804 aaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcactcctcta 9729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 374
Target Start/End: Original strand, 742 - 805
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatca 374  Q
    |||||||||||||||||||||| |||| ||| |||||||| ||||||||||||||| |||||||    
T  742 ctagtttcttctccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatca 805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 10977 - 11052
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    |||||||||||||||||  |||| || ||||||  |||||||| |||||||||||||||  |||||||||||||||    
T  10977 aaccctagtttcttctctatcatacaccaaagatgggtgattttgggtcaatttttgacttaaaatcacccctcta 11052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 105010 - 105085
Alignment:
Q  307 aaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| ||| |||| ||||||||| |||||||||||| |||| |||||| ||||||||| |||||| |||||||    
T  105010 aaccctaatttattcttcttcatccaccaaagagaggtggtttaaggtcaaattttgaccccaaatcagccctcta 105085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 1243 - 1174
Alignment:
Q  311 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctct 381  Q
    |||||| |||||| |||||||| ||||||  ||||||||||| ||||||||||||||||||||| ||||||    
T  1243 ctagttacttctctttcatccaccaaagatgggtgatttagg-tcaatttttgacccaaaatcatccctct 1174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 25661 - 25595
Alignment:
Q  316 ttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctcta 382  Q
    ||||||| |||| |||| ||||||| |||| |||| ||||||||||| |||| ||| ||||||||||    
T  25661 ttcttcttcttcgtccaccaaagaggggtggtttaaggtcaattttttaccccaaagcacccctcta 25595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 11906 - 11865
Alignment:
Q  334 caaagagaggtgatttagggtcaatttttgacccaaaatcac 375  Q
    |||||| || |||||||| |||||||||||||||||||||||    
T  11906 caaagatagatgatttagtgtcaatttttgacccaaaatcac 11865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 11086 - 11017
Alignment:
Q  132 attttatatgaatatctttaaataagaaatattatttcagtttaaatagactaac-aactaatagataaa 200  Q
    |||| ||||||| ||||||||||||| ||||| || | ||||||||||||||| | |||||||| |||||    
T  11086 atttcatatgaacatctttaaataagcaatatgatctaagtttaaatagactatcaaactaatatataaa 11017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 244598 - 244647
Alignment:
Q  313 agtttcttctccttcatccatcaaagagaggtgatttagggtcaattttt 362  Q
    |||||||||| |||||||||  |||||| | |||||||||||||||||||    
T  244598 agtttcttcttcttcatccacaaaagagggttgatttagggtcaattttt 244647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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