View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2478_low_1 (Length: 649)
Name: NF2478_low_1
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2478_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 42229575 - 42230085
Alignment:
| Q |
19 |
gagtgacagtttagcatctgctggagctacatcagtcattgcttgggctgttactgctctagccatggggtacattaaacctctaatcattcgttattat |
118 |
Q |
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| T |
42229575 |
gagtgacagtttagcatctgctggagctacatcagtcattgcttgggctgttactgctctagccatggggtacattaaacatctaatcattcgttattat |
42229674 |
T |
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| Q |
119 |
gaaaacacaaaca--------------------cgaacaccagacacatactaactattatacatttgctatgcattatgaataggttggcttgcaagca |
198 |
Q |
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| T |
42229675 |
gaaaacacgaacaccagacacaaaacacgaacacgaacaccagacacatactaactataatacatttgctatgcattatgaataggttggcttgcaagca |
42229774 |
T |
|
| Q |
199 |
gatacacataggaggacatagaggatggaggctgaagatggtcgaggcatttataatcatactaacattcacacaattgttgtgcttattgctgacgcat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42229775 |
gatacacataggaggacatagaggatggaggctgaagatggtcgaggcatttataatcatactaacattcacacaattgttgtgcttattgctgacccat |
42229874 |
T |
|
| Q |
299 |
gcaggactgtacaatagcagatatggtccaggttatcgtgacactgactatggtgttggaggaggagctactggagatccaatgcacaagggtggtcctg |
398 |
Q |
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| T |
42229875 |
gcaggactgtacaatagcagatatggtccaggttatcgtgacactgactatggtgttggaggaggagctactggagatccaatgcacaagggtggtcctg |
42229974 |
T |
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| Q |
399 |
ttggtggcacacgtgtttaaataaacatcattatccatataactacactttgtttcttg-tttttaataatattgtagtctcctagtttgggacacggga |
497 |
Q |
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| T |
42229975 |
ttggtggcactcgtgtttaaataaatatcattatccatataactacactttgtttcttgttttttaataatattgtagtttcctagtttgggacacggga |
42230074 |
T |
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| Q |
498 |
ctatgttcctg |
508 |
Q |
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| T |
42230075 |
ctatgttcctg |
42230085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 536 - 636
Target Start/End: Original strand, 42230113 - 42230213
Alignment:
| Q |
536 |
gggtttgttgtatgaagagtgtcactttgtagcattacgttgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcatct |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42230113 |
gggtttgttgtatgaagagtgtcactttgtagcattacattgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
42230212 |
T |
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| Q |
636 |
c |
636 |
Q |
| |
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| |
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| T |
42230213 |
c |
42230213 |
T |
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