View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2478_low_2 (Length: 476)
Name: NF2478_low_2
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2478_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 64 - 458
Target Start/End: Complemental strand, 39733509 - 39733116
Alignment:
| Q |
64 |
taattattttcagattttgatccaaaaatatatcttatcagggaaagagtaatgtacaagtggtagtttcaagtcaagtagaaaagatcaatgacgtaaa |
163 |
Q |
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| T |
39733509 |
taattattttcagattttgatccaaaaatatatcttatcagggaaagagtaatgtacaagtggtagtttcaagtcaagtagaaaagttcaatgacgtaaa |
39733410 |
T |
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| Q |
164 |
atttgaatgagaagatggggaggtaggcacgtggaaagaaactaatttagcaagattctgaaatttatatcaacatcaaaagcatttttccgcgaggtta |
263 |
Q |
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| T |
39733409 |
atttgaatgagaagatggggaggtaggcacgtggaaagaaactaatttagcaagattctgaaatttatatcaacaccaaaagcatttttccgcgaggtta |
39733310 |
T |
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| Q |
264 |
aaacattattggttaatcagaaaacaacctaccgcaatcatgcagacttcttggagaaagtggcagtgcaacaagtataaaattctctttcaacaaatgc |
363 |
Q |
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| T |
39733309 |
aaacattattggttaatcagaaaacaacctaccacaatcatgcagacttcttggagaaag-ggcagtgcaacaagtataaaattctctttcaacaaatgc |
39733211 |
T |
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| Q |
364 |
aacaaaaaatttacaacattctttgcttttaattccagcattgctcattttataacaacggtaaggaacaaactgaatactgaatagggtacctt |
458 |
Q |
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| T |
39733210 |
aataaaaaatttacaacattctttgcttttaattccagcattgctcattttataacaacggtaaggaacaaactgaatactgaatagggtacctt |
39733116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 401
Target Start/End: Original strand, 39867553 - 39867840
Alignment:
| Q |
118 |
tacaagtggtagtttcaagtcaagtagaaaagatcaatgacgtaaaatttgaatgagaagatggggaggtaggcacgtggaaagaaactaatttagcaag |
217 |
Q |
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| T |
39867553 |
tacaagtggtagcttcaagttcagtagaaaagtttaatggcgtaaaatttgaatgagca-----------aggcgcatggaaagaaactagtttagcaag |
39867641 |
T |
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| Q |
218 |
attctgaaatttatatcaacatca---aaagcatttttccgcgaggttaaaacattattggttaatcagaaaacaacctaccgcaatcatgcagacttct |
314 |
Q |
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| T |
39867642 |
gttctaaagtttatatcaacaacagcaaaagaattttcccacaaggtaaacaaattattggttaatcagaaaacaacccaccacaatcatgcaggcttct |
39867741 |
T |
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| Q |
315 |
tggagaaagtggcagtgcaa-----------caagtataaaa-ttctctttcaacaaatgcaacaaaaaatttacaacattctttgcttttaattccag |
401 |
Q |
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| T |
39867742 |
cagaggaagttgtggtgcaacttgaatttttcaagaataaaatttctctttcagtaaatgcaacaaacatcttacaacattctttgcttttaattccag |
39867840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 39733560 - 39733525
Alignment:
| Q |
10 |
ataatactaacaataccaacattgacaatttaaatt |
45 |
Q |
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| T |
39733560 |
ataatactaacaataccaacattgacaatttaaatt |
39733525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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