View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2478_low_3 (Length: 469)
Name: NF2478_low_3
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2478_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 191 - 455
Target Start/End: Original strand, 51268889 - 51269152
Alignment:
| Q |
191 |
cgtaccactcatagtttttatcaaataatgccattttatatttttattgccgaaaaaatacattattaatttcaacatgaaaactatacgttaaaaagaa |
290 |
Q |
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| T |
51268889 |
cgtaacactcatagtttttatcaaataatgccattttatatttttattgccgaaaaaatacattattaatttcaacatgaaaactatacgttaaaaagaa |
51268988 |
T |
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| Q |
291 |
aaagaacatcgtttattttgttctgaaatctaacatttcttaaaagaaagaggacggtaatcattgaactctaaaccactactccattataaagatttat |
390 |
Q |
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| T |
51268989 |
aaagaacatcgtttattttgttctgaaatctaacatttcttaaaagaaagaggacggtaatcattgaactctaaaccactactccattataaagatttat |
51269088 |
T |
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| Q |
391 |
agtatcatataacgaataaattattgtcaaagtttaagttttaaataaagatacatggataattt |
455 |
Q |
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| T |
51269089 |
agtatcatataacgaataaattattgtcaaagtttaagttttaaataaagataca-ggataattt |
51269152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 53098357 - 53098223
Alignment:
| Q |
1 |
ttttatgataaatatcatcataggtttgaaaaaatcaaagaaagagaaggtgagaagcttaagtgctgttgctgaagcattatcaatgggttgcaatctc |
100 |
Q |
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| T |
53098357 |
ttttctgataaatatcatcataggtttgaaaaaatcaaagaaagagaaggtgagaagcttaagtgctgttgctgaagcattatcaatgggttgcaatctc |
53098258 |
T |
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| Q |
101 |
tccgattctcataaatcaaatcccaaaaaggttcg |
135 |
Q |
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| T |
53098257 |
tccgattctcataaatcaaatcccaaaaaggttcg |
53098223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 269 - 455
Target Start/End: Original strand, 23306990 - 23307182
Alignment:
| Q |
269 |
gaaaactatacgttaaaaagaaaaagaacatcgtttattttgttctgaaatctaacatttcttaaaagaaagaggacggtaatcattgaactctaaacca |
368 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
23306990 |
gaaaactataaattaaaaagaaaaagaacatcgtttatttggttccgtaatctaacacttcttaaaagaaagaggaccgtaataattgaactctaaacca |
23307089 |
T |
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| Q |
369 |
ctactccattataaagatt------tatagtatcatataacgaataaattattgtcaaagtttaagttttaaataaagatacatggataattt |
455 |
Q |
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| T |
23307090 |
ctgctccattaaaaagattttataatatcatatcatataatgaataaaatattgtcaaagcgtaagttttaaataaagatacatggataattt |
23307182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 23306948 - 23306994
Alignment:
| Q |
201 |
atagtttttatcaaataatgcca-ttttatatttttattgccgaaaa |
246 |
Q |
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|||||||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
23306948 |
atagttttaatcaaataaagccaattttatatttttattgccgaaaa |
23306994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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