View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2478_low_5 (Length: 295)

Name: NF2478_low_5
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2478_low_5
NF2478_low_5
[»] chr4 (4 HSPs)
chr4 (19-87)||(52186293-52186361)
chr4 (190-256)||(13847590-13847656)
chr4 (181-246)||(13848332-13848397)
chr4 (256-289)||(25677258-25677291)
[»] chr7 (1 HSPs)
chr7 (179-255)||(34343344-34343418)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 52186293 - 52186361
Alignment:
Q  19 atacacccaagtattttcctaattttgttttacaaattaaattccaccaactaaattaggctatacgtt 87  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52186293 atacacccgagtattttcctaattttgttttacaaattaaattccaccaactaaattaggctatacgtt 52186361  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 13847656 - 13847590
Alignment:
Q  190 ggtgtaagtcatttattaaggttcaaccatggtccctttaatttgggatccatattaaaggcaccct 256  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||  ||||||||    
T  13847656 ggtgtaagtcatttgttaaggttcaaccatggttcctttaatttgggatctatattaggggcaccct 13847590  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 13848332 - 13848397
Alignment:
Q  181 tgactggccggtgtaagtcatttattaaggttcaaccatggtccctttaatttgggatccatatta 246  Q
    ||||||||  ||||| ||||||| || |||||||  |||||||||||||||||| | |||||||||    
T  13848332 tgactggctagtgtaggtcatttgttgaggttcactcatggtccctttaatttgaggtccatatta 13848397  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 25677258 - 25677291
Alignment:
Q  256 taatttaaataatctttttaaatatattcttcga 289  Q
    |||||||||||||||||||||||||||| |||||    
T  25677258 taatttaaataatctttttaaatatatttttcga 25677291  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 34343418 - 34343344
Alignment:
Q  179 tctgactggccggtgtaagtcatttattaaggttcaaccatggtccctttaatttgggatccatattaaaggcaccc 255  Q
    |||||||||| | |||||||||||| |||||||||||||||| | ||||||||||||| |||||||||| |||||||    
T  34343418 tctgactggctgatgtaagtcatttgttaaggttcaaccatgat-cctttaatttggg-tccatattaagggcaccc 34343344  T

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