View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2478_low_6 (Length: 258)
Name: NF2478_low_6
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2478_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 26236045 - 26236292
Alignment:
| Q |
1 |
tttcgtctctacatatgtcatggaaggtagtctcaaatcccgttgtctcataatatcatcaagataatgaatgtagcaatgagaggtctgctttcgggtt |
100 |
Q |
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| T |
26236045 |
tttcgtctctacatatgtcatggaaggtagtctcaaatcccgttgtcacataatatcatcaagataatgcatgtagcaatgagaggtctgctttcgggtc |
26236144 |
T |
|
| Q |
101 |
gctggggaggtgcatactcatgtcgatgtatggggatggtttagatataaccaaactgatgcaataccccttccggcagatatcagacaatgcaaggtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
26236145 |
gctggggaggtgcatactcatgtcgatgtatggggatggtttagatataaccaaactgatgcaatacccctttcggcagatatcagacaatgcgaggtcc |
26236244 |
T |
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| Q |
201 |
atatttgagccatctatagtaaagactgattcgctcgaatggatgtgt |
248 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||| |||||| |
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| T |
26236245 |
atatttgagccatctagagtaaagactaattcgctcgaatgaatgtgt |
26236292 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 40002406 - 40002464
Alignment:
| Q |
178 |
agatatcagacaatgcaaggtccatatttgagccatctatagtaaagactgattcgctc |
236 |
Q |
| |
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| T |
40002406 |
agatatcagaccatgcgaggtccatagtttagccatccaaagtaaagactgattcgctc |
40002464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 17362061 - 17362120
Alignment:
| Q |
125 |
gatgtatggggatggtttagatataaccaaactgatgcaataccccttccggcagatatc |
184 |
Q |
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| T |
17362061 |
gatgcatggggatggtttggacataaccaaactgatgcaacacccgctccgacagatatc |
17362120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 11152594 - 11152716
Alignment:
| Q |
118 |
tcatgtcgatgtatggggatggtttagatataaccaaactgatgcaataccccttccggcagatatcagacaatgcaaggtccatatttgagccatctat |
217 |
Q |
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|||||| ||||| |||||||||||| || |||||||||||| |||| |||| |||| || ||||||||| |||||||| |||||||| |||| | |
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| T |
11152594 |
tcatgtggatgt-tggggatggtttggacataaccaaactggtgcagtacctgctccgacaaatatcagacccgacaaggtccgtatttgagtcatccag |
11152692 |
T |
|
| Q |
218 |
agtaaagactgattcgctcgaatg |
241 |
Q |
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|||||||| | ||||||| ||||| |
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| T |
11152693 |
agtaaagagttattcgcttgaatg |
11152716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 24141589 - 24141693
Alignment:
| Q |
135 |
gatggtttagatataaccaaactgatgcaataccccttccggcagatatcagacaatgcaaggtccatatttgagccatctatagtaaagactgattcgc |
234 |
Q |
| |
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|||||||| || ||||||||||| ||| |||| ||| ||||||||| ||| ||| |||||||||| |||| |||| | | ||||||||||||||| |
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| T |
24141589 |
gatggtttggacgtaaccaaactggcacaacacccgctccagcagatatcggaccctgcgaggtccatatctgaggcatccaaaataaagactgattcgc |
24141688 |
T |
|
| Q |
235 |
tcgaa |
239 |
Q |
| |
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||||| |
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|
| T |
24141689 |
tcgaa |
24141693 |
T |
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