View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2478_low_7 (Length: 255)
Name: NF2478_low_7
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2478_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40121606 - 40121839
Alignment:
| Q |
1 |
ccataccactgctaagaacattgttccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcact |
100 |
Q |
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| T |
40121606 |
ccataccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtgagcact |
40121705 |
T |
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| Q |
101 |
actactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaatatgtacacctagtttgttggaaatgaatt |
200 |
Q |
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| T |
40121706 |
actactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaata---acacctagtttgttggaaatgaatt |
40121802 |
T |
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| Q |
201 |
tgttctcaccaacttcttttggtaactggtgttttgt |
237 |
Q |
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| T |
40121803 |
tgttctcaccaacttcttttggtaactggtgttttgt |
40121839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 40092811 - 40093019
Alignment:
| Q |
26 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
125 |
Q |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
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| Q |
126 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
222 |
Q |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40093004 |
T |
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| Q |
223 |
taactggtgttttgt |
237 |
Q |
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| T |
40093005 |
taactggtgttttgt |
40093019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 40125283 - 40125491
Alignment:
| Q |
26 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
125 |
Q |
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||||| |||||||||||||| | ||| || | ||| ||||||||||||| ||||||||| ||| ||||| ||||||| || |||||||||| |||| |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
126 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
222 |
Q |
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|||||||||||||||||||||||||| |||| |||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40125476 |
T |
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| Q |
223 |
taactggtgttttgt |
237 |
Q |
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||||||||||||||| |
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| T |
40125477 |
taactggtgttttgt |
40125491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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