View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2478_low_8 (Length: 250)
Name: NF2478_low_8
Description: NF2478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2478_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 51351488 - 51351643
Alignment:
| Q |
1 |
ttcactgtttagttgatacataatttcactttaaattcagtgttacaaaatctattcaattcaaaattatatttgacgaatactcactcaaacataattg |
100 |
Q |
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| T |
51351488 |
ttcactgtttagttgatacataatttcactttaaattcagggttacaaaatctattcaattcaaaattatatttgacgaataatcactcaaacataattg |
51351587 |
T |
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| Q |
101 |
agtgtgaagtgaagtgacaatgtttttatgttaaaagctaaaagctttcattttcc |
156 |
Q |
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| T |
51351588 |
agtgtgaagtgaagtgacaatgtttttatgttaaaagctaaaagcgttcattttcc |
51351643 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 51351901 - 51351971
Alignment:
| Q |
171 |
ttgggaaaaaatgtttgttacttgtttgtgtgcatgtttcgagtgtttgtgcaagtctcatgctttcttctc |
242 |
Q |
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| T |
51351901 |
ttgggaaaaaatgtt-gttacttgtttgtgtgcatgtttcgagtgtttgttcaagtctcatgctttcttctc |
51351971 |
T |
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